BAC Information

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BAC

Clone NameMSMg01-088C23
Chromosome6 (Build37)
Map Location 18,230,787 - 18,231,179
singlet/doubletsinglet
Overlap geneCftr
Upstream geneCav2, Cav1, Met, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751
Downstream geneCttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088C23.T7 (MSMg01no088_c23.b1)MSMg01-088C23.TJ (MSMg01no088_c23.g1)
ACCAG307009AG307010
length1,267691
length of high quality
(start - end)
---409 (55 - 463)
definitionCHROMAT_FILE: MSMg01no088_c23.b1 PHD_FILE: MSMg01no088_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:34 2005CHROMAT_FILE: MSMg01no088_c23.g1 PHD_FILE: MSMg01no088_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNTTTTNNNTTTTNNNTTTTNNNNNNNNNNNNNNNNNAAATTTTTTT
TTNNNNNNNNTTTTTTTTTNNNNTTNNNTTTTTTTTTTTTTTTNTNNCAC
TCTTTTTTCTTTNNTTNTTTTTCCTTTTTNNNCCNTCCTTTNNCCCTTTT
TTTTNTTTNTTTTTTTTCTTCCCCCCTTTTTNTACTTTNNCCCACTAGCT
CTCCTTAGTTTTTCGCACCCTCCTCTTCTTCCTCCCCTTCTCTTATGATC
TCTATCACTTGATATACATGCCTCACACTTCTTCCTGTGCTACCTTGCTA
NCTATTCCGTCTTTGTTCCTCTNTCCTCTATATCCCCCCAATCCCTCTTN
TCTTCCTCCCNCTCCTCTCTCCCCCCACCGCCCGCCGTCTGATCTCATCA
CTCAACACATCATCTATCCAACGCACTCGCACGTCTGATATGTGACGTAA
TACCACAATACCACCCNCCCACCNCTNNCACCACCATCATTATAGATAGA
GAGGGAGAGCATCAATATGCTAGGAGTATAGTTGTAAGACCTCCTCCTCA
CTTTACAGAGCCGCGAGAGATTACGGGCCGCAAGCACGCGGCGGAGCACG
AAAGAGAGAGAATGAGGTACGGACAATATGTAGACGCCTATAGTGAGCCA
GTATGGTGTGTACTATCATCTTCTATACTCGGATCAGTGCCGCACGCGCG
CACTCCTCTCACTCTGCCCCAAGAGATATACATAAGAAGTGCTTCGCACT
TCTAGTTATCTCTATATACACAGCATATATCAGCCTGACGCGCTTAGCAT
GCGTATTNATTCCGCAGAGCAGAGAGAGATGGATATACGNCNCNCAGTAG
TCGAGGGCATCACAGCCATATACGTNNTNNNNNNNNNNNNNNNCNNNCCC
NNCCNCNCNNNNNNNNNNNNNNCCTTTCNNNNAAGCCTTNNNCNCNTTGT
GNAGTGNNNNNNNNNNNNNNTNNTTGGTCTCTCNCACGTTCCCNCTACAG
AAATCATGCAACANCNNCNNTAGNNNNNNNNNNNNNNNNCGCAAGACTCN
CCCCCGTACNNCCTCCNTGGNNNNATAGAGAGAGGAGTACAGTACAGATA
CTCCGTCTTAGNANAGGCACGGAGTAGCNCNACTAGCTTCNCCCCNCCCA
GCNCNCNCNCTCTNTNNNNNTTCGCNGAAGANNNNNNNNNNNTAGGAGGG
CGGCNCNNAATTGCCNNNNCNTTGAGGNAGTGGNNCACATACACATCNCN
TCCATACCNGGACCCNN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATCCAGTCTCACTTGAAATCTGGGAGAAACTCTGAGGAAAAATAG
CATCGCTGGTTTTGACTTTGAGCAGTATAAGAACGTATGCATGTCTATGC
ATACACAATGGTAAGGGTATACACTTGTTTGAAAGCCAAAACAAAGCCAT
AGTAGTTAACAAAGTCAATCCTCACGTACTTTATAAGTTTCATTGTTGGG
CCGGGAGAGTTCAGTCGGTAATATGTCTGCTACACAAACATAAGAACCTG
AGGTCAGATTCCAAGCACACATGAAAAACTTTGGGCCTGTACTGAATGTC
TGTAATGCTAGAGATGAAGACACATGGGTCCCGGGGCCTCCCTGGCCAGC
CAGTCCAGCTGAACCAGCAAATGCCAGGTTCTGTGAGAAACTCATGAGAG
AGAGAGAAGGGAAGGAAGAAAGGGAGGAAGGAAGAAAAGAGGGATGGTGG
CGGGAGATTTCATTCTATCATCTCTATAATCATAACCCTATTCATCCTTA
ACATCTTTATTTTATTTCTCCCTCTCTTCCTACTCTTACTGTTGTTCCTC
TTTTTTTTTTTCCTATTACCATTTATTATCCTCTTTCTCTAATTACCATT
CTCATTCTTTATTTATCTTAACACTCCTTCTCTCTATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_c23.g1 MSMg01no088_c23.g1 CHROMAT_FILE:
MSMg01no088_c23.g1 PHD_FILE: MSMg01no088_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:34 2005
         (409 letters)



>mm_chr6_18230787_18231595
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 392/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccagtctcacttgaaatctgggagaaactctgaggaaaaatagcatcgctggttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 393 catccagtctcacttgaaatctgggagaaactctgaggaaaaatagcattgctggttttg 334

                                                                       
Query: 61  actttgagcagtataagaacgtatgcatgtctatgcatacacaatggtaagggtatacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 actttgagcagtataagaacgtatgcatgtctatgcatacacaatggtaagggtatacac 274

                                                                       
Query: 121 ttgtttgaaagccaaaacaaagccatagtagttaacaaagtcaatcctcacgtactttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgtttgaaagccaaaacaaagccatagtagttaacaaagtcaatcctcacgtactttat 214

                                                                       
Query: 181 aagtttcattgttgggccgggagagttcagtcggtaatatgtctgctacacaaacataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aagtttcattgttgggccgggagagttcagtcggtaatatgtctgctacacaaacataag 154

                                                                       
Query: 241 aacctgaggtcagattccaagcacacatgaaaaactttgggcctgtactgaatgtctgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 aacctgaggtcagattccaagcacacatgaaaaactttgggcctgtactgaatgtctgta 94

                                                                       
Query: 301 atgctagagatgaagacacatgggtcccggggcctccctggccagccagtccagctgaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  atgctagagatgaagacacatgggtcccggggcctccctggccagccagtccagctgaac 34

                                            
Query: 361 cagcaaatgccaggttctgtgagaaactcatga 393
           |||||||||||||||||||||||||||||||||
Sbjct: 33  cagcaaatgccaggttctgtgagaaactcatga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)