BAC Information

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BAC

Clone NameMSMg01-088M18
Chromosome6 (Build37)
Map Location 89,054,649 - 89,054,982
singlet/doubletsinglet
Overlap gene4933427D06Rik
Upstream geneRpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream geneGm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M18.T7 (MSMg01no088_m18.b1)MSMg01-088M18.TJ (MSMg01no088_m18.g1)
ACCAG307459AG307460
length688713
length of high quality
(start - end)
512 (56 - 567)335 (56 - 390)
definitionCHROMAT_FILE: MSMg01no088_m18.b1 PHD_FILE: MSMg01no088_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:24 2005CHROMAT_FILE: MSMg01no088_m18.g1 PHD_FILE: MSMg01no088_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCACTTTCCAAAGAGGAGCCGCGGAATTCCAGGA
TTTCCAGGGCTATACAGAGAAAACCTGTCTCGAAAAAAACAAAACAAAAA
AAATTGGAAAAAATCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGACTGGATCAATTTGCATTC
TTCTATCTGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGAGTGTGGGTTTATTTCTGGGTGTTCAATTCTATTCCATTGGTCTA
CTTTTCTGTCTTTATACCAGTACCATGCCGCTTTTATCACAATTGCTCTG
TAGCACAGCTTTAGGTCAAGCATGGTGATTCTACCAGACGTTCTTTTAGC
ATCTAGAAGAGTTTTTGCTATCCTAGGTATTTTGTTATTCCAGATGAATT
TTCCACGTTTTCAAAAGTCCTGTGTGGCCCCCTACACACCTACCTGCAAT
CTACATGACACTTGTGTAAGAACAGGGAAAACGGAAGCTTCTGCCCTCTG
CCTGCTTAACCTTGGCCTCATGACCCAGTCCACTTCTTCCCTGGGTTTAG
AGCCTATTTGGCGGCACAGTGAGGGGTAGCATCATGCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXATCAGCTCGACTGTCCGTCATTAGTCTCCCTACTCCAGGCCCAGG
GGTTACACTAAGTCAATAAAGGAGGAAGGTGGTTCACACAGGATCATGAA
ATCAGAAGGCGTGCTCCCTGCTTGGTGTCTCTACCCCCACTCCGGCACGT
GCTTATTGTGTCAGCGAACTCCTAGACGTCTGCTCTCTGTGATGCTCGAG
AAGCAGCCCTGTGTCCACAGTGAGCTGAGTCTGGGTGTGTAGAGGTGGTG
TAAGATGCACTGGAAAGCCACGTGGGTCAAAAAGCTCTTCACCTGTGATG
TACACTCTGAGTCCCCAGACACGCCTTGAAGCTCTCAGTATGTGTCGCCC
CTGTGTGTTCTGTGTCTTCCTGTTTCCCCTGTCCCTGACTGAAAGTGGTG
TCAGAGAAACTGTCAGCAGGACCATTAATATGCCACAAAGCACAAGGTCA
TCACAGAGCACTTACCACATCCCACCATCTCCTGAGGATGTTCTGCATAC
AAACCTCATATAATTCACCGGGGGTTTGAGTCTTTCCTTTCCTTTCCTTT
CCTTTCCTTTCCTTTCCTTTTCTTTCCTTTCCTTTTCCTTTCCTTTTCCT
TTCCTTTCCTTTCCTTTCCTTTCCCTTCCTTTTCTTTCCATCCCTTTCCT
TACCATTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m18.g1 MSMg01no088_m18.g1 CHROMAT_FILE:
MSMg01no088_m18.g1 PHD_FILE: MSMg01no088_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:24 2005
         (335 letters)



>mm_chr6_89054449_89055183
          Length = 735

 Score =  600 bits (310), Expect = e-176
 Identities = 328/334 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcagctcgactgtccgtcattagtctccctactccaggcccaggggttacactaagtca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcagctcgactgtccgtcgttagtctccctactccaggcccaggggttacactaagtca 260

                                                                       
Query: 61  ataaaggaggaaggtggttcacacaggatcatgaaatcagaaggcgtgctccctgcttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaggaggaaggtggttcacacaggatcatgaaatcagaaggcgtgctccctgcttgg 320

                                                                       
Query: 121 tgtctctacccccactccggcacgtgcttattgtgtcagcgaactcctagacgtctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctctacccccactccggcacgtgcttattgtgtcagcgaactcctagacgtctgctc 380

                                                                       
Query: 181 tctgtgatgctcgagaagcagccctgtgtccacagtgagctgagtctgggtgtgtagagg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tctgtgatgctcgagaagcagccctgtgtccacagtgagctgagtctgggtgtggagagg 440

                                                                       
Query: 241 tggtgtaagatgcactggaaagccacgtgggtcaaaaagctcttcacctgtgatgtacac 300
           ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 tggtgcaagaggcactggaaagccacgtgggtcaaaaagctcttcacctgtgatgtccac 500

                                             
Query: 301 tctgagtccccagacacgccttgaagctctcagt 334
           ||||||||||||||||| ||||||||||||||||
Sbjct: 501 tctgagtccccagacactccttgaagctctcagt 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)