BAC Information

Click to search

BAC

Clone NameMSMg01-089A24
Chromosome6 (Build37)
Map Location 8,085,972 - 8,086,180
singlet/doubletsinglet
Overlap geneCol28a1
Upstream geneEG667500, Tac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661
Downstream geneBC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A24.T7 (MSMg01no089_a24.b1)MSMg01-089A24.TJ (MSMg01no089_a24.g1)
ACCAG307657AG307658
length687888
length of high quality
(start - end)
214 (39 - 252)---
definitionCHROMAT_FILE: MSMg01no089_a24.b1 PHD_FILE: MSMg01no089_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:45 2005CHROMAT_FILE: MSMg01no089_a24.g1 PHD_FILE: MSMg01no089_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTATACGACTCCTATAGTCAGAGATCCGCGGAATTC
ACCAAGACATTACAGACAAGGTAAAACTGCAGACTTAGTCCTCTCTGTCT
GTTCTCCCTGTCAGCCATACCCAGCACACGTATGGCCACACACATGTGTA
AACAGTGTACCTGAAACACTGACTGTACTACACTGTCTCTGCTTTACTTT
TGTTGACTGCCAGGACCACTCACCACAAGCAAGCATTAAAAGAGAACTAG
TGGGGAGCAGCCCCAAGAAGTGGCAGCATAGACAATGTCCTGTCCCAGAT
CCCTGCTCAGAGGGAAAAAGCAGCTGGCTTGTGTGAGCAGAAGCCCCACC
AGAAGTTCAGTACCTTGGGGACAAAGACTGGCTCCAGCCTGCCTGATCTC
CCAGCCTCCCTCTTGGGCAGAGGTAGTGGCTCTTCCAGTGACACTTTCAG
CAGCAAGATCCGTCACTTTCTTCCTTACTTAAAGTTCCACCCACATGAGT
TTGTGTCTGTGCAGGGAGCTGACCCTGTACCACAGCACTCCATTCCCAAA
TACCATGATGAAAGAGCTGATCTTCCAGGAGCGCTGACACACCTATGAGC
ACAAGTAAGACCACCAATTTCGCTCATATTCCTGGCCAAAGATCGACATG
TCCAGAACCATCAGCACACAGGAATCAAGGAAGAGCT
CGCCCCCTCCCCTCCCGCCTTTNCTCCCTCTTGTCTGCTTGTTGTGCGGG
CCTGCTCCGGCGTCCCGTCTGTTCTGCCTGCGGGGGCCGTCCCCCCTGTG
TGCACGGCCTTGTGTTGTGTGCGGTAGGCGGAGGTACGCTGTAAGTATGG
CTCTCGTGCGCGCCGGGTGCGGGGGGGGCTGCTCGGGCGCGCAGTTATGT
AACGTATGATGGGCGGTGCGTGCTTTGGCCGTGCTGTGGTGAGGGATCGG
GGTGGTGCGCCGTGCTGGGCACCGTGCGGGGGTGCCTCAAACAACAACCT
ATACCTAACATAAAAAATAACTAATACAACCACAATAAATCCTAAACCCC
TATATAAGCCGCCAGAGGACCTGGTGCGTGAGGAGATAGTGAAAAATGCC
GGTACGCCTCTCGCCCCTTGAAAATCACACTCATACAAATCCAAAATACA
CTCGACTATCCTAAACGACATTACCCCTACCCACCTACCAAATTATCCTA
AATACATACTACCCATTTATATACCCTCCTTACTACCTTTTCTCTACCAT
AAAAAAACAAAATACTGCCCTCCATCACTAACTAATCAGTCCAACCTTTC
TTTTCCTCCATTTTACTTAACCATCTAACAACCTCTAACTACCACTTTTC
CCATAATTACATAAACTTTCCATACCAACCAAACCCCATCCCATGCAATC
AATATATCCAATCACTATAAATTACACCACACACCCCCTCACCACTATTA
TTATCTCCTTCCCATTCCATTATTATAATTACCAGCGACTCCCACTAAAC
TCCCAAAATATATACTACACCTAATAAAATAATTTCCCCCATTCCGCCTT
TTCTTATCCCCCCACCCATTTTTCCCTTTTACCCGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a24.b1 MSMg01no089_a24.b1 CHROMAT_FILE:
MSMg01no089_a24.b1 PHD_FILE: MSMg01no089_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:45 2005
         (214 letters)



>mm_chr6_8085767_8086380
          Length = 614

 Score =  389 bits (201), Expect = e-113
 Identities = 207/209 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcaccaagacattacagacaaggtaaaactgcagacttagtcctctctgtctgtt 65
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaccaagacagtatagacaaggtaaaactgcagacttagtcctctctgtctgtt 265

                                                                       
Query: 66  ctccctgtcagccatacccagcacacgtatggccacacacatgtgtaaacagtgtacctg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctccctgtcagccatacccagcacacgtatggccacacacatgtgtaaacagtgtacctg 325

                                                                       
Query: 126 aaacactgactgtactacactgtctctgctttacttttgttgactgccaggaccactcac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaacactgactgtactacactgtctctgctttacttttgttgactgccaggaccactcac 385

                                        
Query: 186 cacaagcaagcattaaaagagaactagtg 214
           |||||||||||||||||||||||||||||
Sbjct: 386 cacaagcaagcattaaaagagaactagtg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)