BAC Information

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BAC

Clone NameMSMg01-089B24
Chromosome6 (Build37)
Map Location 46,777,184 - 46,777,615
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneRbpsuh-rs3
Downstream geneLOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089B24.T7 (MSMg01no089_b24.b1)MSMg01-089B24.TJ (MSMg01no089_b24.g1)
ACCAG307703AG307704
length684690
length of high quality
(start - end)
436 (37 - 472)496 (77 - 572)
definitionCHROMAT_FILE: MSMg01no089_b24.b1 PHD_FILE: MSMg01no089_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:49 2005CHROMAT_FILE: MSMg01no089_b24.g1 PHD_FILE: MSMg01no089_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTA
TTTGTTGCTTCATCTAAGTCACTCCCACTAGATGCCATTACTTAGGGTTA
ACAGTTTTGGGGGAGTCATGTTGTCTTGGTTTTTCATGTTTCTTGTTAGT
ATGTTGGATTGTATATATTGGGTGTTATTTTGTTGTTTGATTTATTTTTA
TTGTTATATTCTTTTGGTTGAAGTAGTTGAACTTTGGTCAAAGTGTGTTG
AAATGAGAACTGGATTGCAAAAAACAATACCTTTATCTAGGACTTTTGGG
ATACCTGATTAAAATTATATATTATTCCCTGAGTAGGATATTCAGACTCC
TAGATTTTCTTTTACTTTTTAATACTTGTTGGTGTTTTCCCTTGTGGATG
AAAGCATAGAACTAATCTTTTCACCTGTATAACAAGGGTTCTGCATTCAA
GAAAAATGTGCCCATCCCAATAGGTCTAGTATGCGCAACCCTAAATATGT
GTAGAAGATGGAGGTGGACTTCTACAGTTATTCCCACTATATAGAGATCT
TTACAATATCTATCTTCATTTTTTATTTTACCTTGTCCCTATAATTCCTA
TAAAACTGTTCTGTGCAATTCCTTTTACTAATGGGATTCCCACAGTCCAG
CTAGGTTTTTAATGAACCCTGACCCAAAAATTCT
NCCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTACAACATAGATATAATTG
ATTTGGAGAAAATAGGACCAGGCTTTTCGAGAGAAACTTTAATCCAGCAA
CATGGCTGCTCTGGCAATGAACCACATTCACAGATATGATCCAGTGTGAA
TGTAGACATGCCACACACCTTTGATATCTCTGACTGGACTAGAGACATAT
CTTTACTGCATATTTTTAATTCTAAATAATCTATTTGAGTGGCAGACAAA
GTGATGAATCAGAGAAAGATCTGATAAAATGAATAAGAGAGATAAGATAT
ACTCAACTCTCATAAGAACAGAAAAGAAATGCTACTTAAAGAGCAGTAAG
GTGTTGGAGTCTGCCAAAAGACCCTCACTCACAAAGACCACAGAGATCAT
CATTGCTGTAAACCACAAGAGGATTTTTTATTGATCCAATGAGTTGGGGA
CCCCCCTTAGAATGCAGGCAAGAGGAGAGACCCCTGAATGAACAAAGAAC
ACACTTTTTATACCTTGTAAGGCGAAGATTTAGGCAACAGGGCTAGCTGT
CTTATTCTCACTGGTGTAGCAAGTAACCCTTTCAGGTATTGGTTGGTTTG
CATAAGGTGACTACCTTTGGCCTAATGACTTACTCTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_b24.b1 MSMg01no089_b24.b1 CHROMAT_FILE:
MSMg01no089_b24.b1 PHD_FILE: MSMg01no089_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:49 2005
         (436 letters)



>mm_chr6_46776980_46777815
          Length = 836

 Score =  764 bits (395), Expect = 0.0
 Identities = 423/435 (97%), Gaps = 6/435 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatttg---ttgcttcatctaagtcactcccactagatgccattacttaggg 61
           ||||||| ||||||   |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatttgggat---ttcatctaagtcactcccactagatgccattacttaggg 261

                                                                       
Query: 62  ttaacagttttgggggagtcatgttgtcttggtttttcatgtttcttgttagtatgttgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttaacagttttgggggagtcatgttgtcttggtttttcatgtttcttgttagtatgttgg 321

                                                                       
Query: 122 attgtatatattgggtgttattttgttgtttgatttatttttattgttatattcttttgg 181
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 attgtatatattgggggttattttgttgtttgatttatttttattgttatattcttttgg 381

                                                                       
Query: 182 ttgaagtagttgaactttggtcaaagtgtgttgaaatgagaactggattgcaaaaaacaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgaagtagttgaactttggtcaaagtgtgttgaaatgagaactggattgcaaaaaacaa 441

                                                                       
Query: 242 tacctttatctaggacttttgggatacctgattaaaattatatattattccctgagtagg 301
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tacctttatctaggagttttgggatacctgattaaaattatatattattccctgagtagg 501

                                                                       
Query: 302 atattcagactcctagattttcttttactttttaatacttgttggtgttttcccttgtgg 361
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atattcagactcgtagattttcttttactttttaatacttgttggtgttttcccttgtgg 561

                                                                       
Query: 362 atgaaagcatagaactaatcttttcacctgtataacaagggttctgcattcaagaaaaat 421
           ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 atgaaagcatagagctaatcttttcacctgtataacaagggttctgcattcaggaaaaat 621

                          
Query: 422 gtgcccatcccaata 436
           |||||||||||||||
Sbjct: 622 gtgcccatcccaata 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)