BAC Information

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BAC

Clone NameMSMg01-089F18
Chromosome6 (Build37)
Map Location 81,722,187 - 81,722,499
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042991
Downstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412, Hk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089F18.T7 (MSMg01no089_f18.b1)MSMg01-089F18.TJ (MSMg01no089_f18.g1)
ACCAG307880AG307881
length679683
length of high quality
(start - end)
318 (43 - 360)544 (77 - 620)
definitionCHROMAT_FILE: MSMg01no089_f18.b1 PHD_FILE: MSMg01no089_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:08 2005CHROMAT_FILE: MSMg01no089_f18.g1 PHD_FILE: MSMg01no089_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGAACAGAATACTCTACAATTGACAGATTTTAAAACTATAATTAGA
TTTCCCAACTTCTTATGTCATTCTTAGTTTCTGCATAATATAGAAAGCCC
TTTTATTCTCTTTACTAAAAGAGAAACAGAACCGGAAGATGGATCCATGG
GTAAGGTTGTTTGCCATGGGAGCCTGATGACCTGAATTTGATCCCTAGAA
CCTATGGTAGAAAGATTTAAAAACCAGCCCTCAAAAGTTGTCCTCTGACC
TCCACACATATACCACTGCATAGAGGCCTATCATGTGCATATGCAAACAC
ACACACACATTCTCACAGCAGCAGCAGCAAAGAAATAAATTATGTTTAAA
GGCAAAAAAGTGTGTTTCAAAATATGTTCCAAAATAATTACAGTTGATAA
ATATTATCCGTAAATTACAAGCCAAAGAACAACCAAAACAAAATGTTTCC
ATGCTAAGATTTATGTCACTCCTGTTGTAGTTACTTCCAAAGCAGGAAGT
TTATGGCGTTTTTCTATTTATCTGTGTCAGCTAGAAACTCTAGCTCTTCT
CCCCAACAGTCTAAAGAAGTTCTTGTTGGCATTTAGTTTAGGCTCCGCCC
CACAATTACCCGGCAACAGCCAGGTGTGC
NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATGCCAAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACTACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAAGTGGACATAGTACTACTGGAGGATC
TAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGGCCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_f18.b1 MSMg01no089_f18.b1 CHROMAT_FILE:
MSMg01no089_f18.b1 PHD_FILE: MSMg01no089_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:08 2005
         (318 letters)



>mm_chr6_81721983_81722700
          Length = 718

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgaacagaatactctacaattgacagattttaaaactataattagatttccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgaacagaatactctacaattgacagattttaaaactataattagatttccc 264

                                                                       
Query: 65  aacttcttatgtcattcttagtttctgcataatatagaaagcccttttattctctttact 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 aacttcttatgtcattcttagtttctgcataatatagaaagcccttttattctctttaat 324

                                                                       
Query: 125 aaaagagaaacagaaccggaagatggatccatgggtaaggttgtttgccatgggagcctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 aaaagagaaacagaaccggaagatggatccatgggtaaggttgtttgccatgggaccctg 384

                                                                       
Query: 185 atgacctgaatttgatccctagaacctatggtagaaagatttaaaaaccagccctcaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgacctgaatttgatccctagaacctatggtagaaagatttaaaaaccagccctcaaaa 444

                                                                       
Query: 245 gttgtcctctgacctccacacatataccactgcatagaggcctatcatgtgcatatgcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttgtcctctgacctccacacatataccactgcatagaggcctatcatgtgcatatgcaa 504

                        
Query: 305 acacacacacaca 317
           |||||||||||||
Sbjct: 505 acacacacacaca 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)