BAC Information

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BAC

Clone NameMSMg01-090B07
Chromosome6 (Build37)
Map Location 143,737,196 - 143,841,822
singlet/doubletdoublet
Overlap geneSox5
Upstream geneGm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B07.T7 (MSMg01no090_b07.b1)MSMg01-090B07.TJ (MSMg01no090_b07.g1)
ACCAG308408AG308409
length784763
length of high quality
(start - end)
126 (71 - 196)217 (72 - 288)
definitionCHROMAT_FILE: MSMg01no090_b07.b1 PHD_FILE: MSMg01no090_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:07 2005CHROMAT_FILE: MSMg01no090_b07.g1 PHD_FILE: MSMg01no090_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,841,697 - 143,841,822)(143,737,196 - 143,737,412)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAGGTAGTATACCTTCAGTATTTATTTTTCTAGATTAGGCTTGATA
CTCTGGATTTAGGAATTGTGATGACTAGTCCATGGAAAGACACTGTATCT
TTTAGAGTACATGTGTATGCACATATGAATATGCATGTGTATGTGGTCCT
GATGTGGACATCCTTTCTGTGATATGCAGGAAGCATCCTCACTTTGGCAA
TTTTTGCCCTCGGTTCTGATAGTGAAACTTGACTTGTTACGAGCGCCTGA
CCTACTGGACAGAAAACGAGAAAAAGTTATATAAAAAGAAGGCAACTAGG
AGAAGCAGAAGACACAATTATTTTTTCCCCCCCCCCCCCCCCGAAAACAG
CCAAAAACATAAAACAAACAAAAAGAAAGAGGAAAAAAACAAAAAAAACA
GAACACCCAGCCGCACAACACACACAGGAAAAACAAAAACAAACACCAAA
CAAAAGAATAAACGAGACAAAGACAAAACAGACTCTCAGAAACAATCACA
ATTCTCAACTATCTTACATCCCCATTTTCCCACACTCCTCACAATTCAAC
AAAACAACATCAAATAAAATAAACAAATAAAAATTTCATAACCTCAAAAT
CACTTCTCCTTCTATTCCTGGGATGATATCCATTCCCCATCATGGCATCA
CACCCACACAACTTTCTAGTAATAGCAATATATCTACTCGTTCATACTAT
ATTCATGCCGACAGTGGTGCGTATAAATAAAAAC
TGCATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGGCAGGCTTGGGCCACATATAGAAACA
CTTTCCCATAAAACTGCACAAAGTAAATACTGAAATAAAAAGCTTATTTT
TAGCAAAGAACAGATACTCACAAAGCTAGAACTGGTAAGTAGAATTAAGG
CATAGGAAATAATATTTATGGTAGAATTCTATAGCAAAATAATCTCTTAG
GCCTATTTGTCAGTGTGACTGTAAGACTCCAGGGAGCCTTAGCTCACTGG
GGACCCCCTGAGCGAACCACGTGGTGCCAGTATCGATGCCAACAGCACGA
GGAACTGATTGTTTTTTTGCCCCCCCCCCCCCCCAAGACCCTTAGTAAAG
AAAGTGATTCCCAAGATTCGCTCAATGAAAATATATATTGGTGTTCAGGG
TATAAACATAACTTCATACTTCTATTTTTTTTTGTATTGGTCAGATCAAA
GAACACATATATACTGGATAGTCTTACAATAACATGAAGTATCATAGTAC
TCCCCTTTGTTCGAAAACAAATATCGGATCTACTCAGTGGTCTATTGCTC
CCTTCTCTCGGGTCAAAATCCCAGAAACGGGGTACCCGAGGGAGGGGAAT
GTGGTGAACCAGCGGTGTATGATACGGGACTGGGGAAGCTGTGATCCAAC
ATGGCTCTGAAGGGCGCGAGAAAGCCTGGAGGGCTCAATGAACTCAAGGA
AAATGTGGCGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b07.b1 MSMg01no090_b07.b1 CHROMAT_FILE:
MSMg01no090_b07.b1 PHD_FILE: MSMg01no090_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:07 2005
         (126 letters)



>mm_chr6_143841497_143842022
          Length = 526

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatttatttttctagattaggcttgatactctggatttaggaattgtgatgactagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtatttatttttctagattaggcttgatactctggatttaggaattgtgatgactagtc 267

                                                                       
Query: 61  catggaaagacactgtatcttttagagtacatgtgtatgcacatatgaatatgcatgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catggaaagacactgtatcttttagagtacatgtgtatgcacatatgaatatgcatgtgt 207

                 
Query: 121 atgtgg 126
           ||||||
Sbjct: 206 atgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no090_b07.g1 MSMg01no090_b07.g1 CHROMAT_FILE:
MSMg01no090_b07.g1 PHD_FILE: MSMg01no090_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:07 2005
         (217 letters)



>mm_chr6_143736996_143737612
          Length = 617

 Score =  420 bits (217), Expect = e-122
 Identities = 217/217 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaggcttgggccacatatagaaacactttcccataaaactgcacaaagtaaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaggcttgggccacatatagaaacactttcccataaaactgcacaaagtaaatact 260

                                                                       
Query: 61  gaaataaaaagcttatttttagcaaagaacagatactcacaaagctagaactggtaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaataaaaagcttatttttagcaaagaacagatactcacaaagctagaactggtaagta 320

                                                                       
Query: 121 gaattaaggcataggaaataatatttatggtagaattctatagcaaaataatctcttagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattaaggcataggaaataatatttatggtagaattctatagcaaaataatctcttagg 380

                                                
Query: 181 cctatttgtcagtgtgactgtaagactccagggagcc 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctatttgtcagtgtgactgtaagactccagggagcc 417


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 617
Length adjustment: 9
Effective length of query: 208
Effective length of database: 608
Effective search space:   126464
Effective search space used:   126464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)