BAC Information

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BAC

Clone NameMSMg01-090N10
Chromosome6 (Build37)
Map Location 128,711,117 - 128,789,935
singlet/doubletdoublet
Overlap geneKlrb1c, LOC100043862, Klrb1d
Upstream genePrmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a, EG545878, LOC677440, Clec2h, LOC100043863, LOC100043861
Downstream geneLOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090N10.T7 (MSMg01no090_n10.b1)MSMg01-090N10.TJ (MSMg01no090_n10.g1)
ACCAG308954AG308955
length696702
length of high quality
(start - end)		451 (44 - 494)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no090_n10.b1 PHD_FILE: MSMg01no090_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:08 2005CHROMAT_FILE: MSMg01no090_n10.g1 PHD_FILE: MSMg01no090_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(128,789,489 - 128,789,935)(128,711,117 - 128,711,404)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCAATCTAGGATGGAAGAGATGTTTAGTTTCAATCACCTCCATTCC
ATCCCCACTGACTGAGAAAAGCCCGGAAGTCCATGGCGGAATGAATCACA
ATCCACCTTTGTCCTCATCCCACAGTAGCAGAGGCTCTTACGTCCGGCTA
GTAGGTGGCATCACACCCATCACCTTTGACAGACCTTAGAATCCCATGCA
CTTAGGGGTCTTGACCACATGGGGGCATACCAGAGGTGCAGTGACGAGTC
GGTCTTTCCGGACCTCGGTCAGTGAGCAGACAAACACAATGGTTGCCAGA
GAGGAGGAGAGTGGTCCCATCCTGCATGTGATGGAATCGCCACAAACAAT
CTAGGGAAGGGAGAACTCTAAGCAACCTGGTGAATAGTTGAGGCCAGCTG
AGCCCAAGAGAAGAGCAAAGCTGTCAGGAGTTCCTAGGTCCTGCTGCTTG
AGGCGGTCCATGTATGCCAAAACTACTTTTTTCAAAATGAGAGGAGTAGT
AAAGAGAGGAGGGAGGAGAGGACGACGTCCAAGTTGATTTGGAGTCACTA
GCCACCGCATGAAAGAGGCCTCCCGGTTAGTGGACTAGGTAGACGCCAGG
GCGCTAATCCTTCGGTCATCCTCAGGCTGTGGAGCGTTTGGACCTG

NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTATTCCTCTTTGGCTTGCAC
TTTCTTGCAGTACCCAGGGCTTTTTCTAGACAAGCAGACACAACGGTCCA
GGTAAAGAGACTGCAGAATTAGATCTCTAGTGTGCTGGTGAGGGCAGGGG
AGTGTGATAAGGTCTCAGGGTGTCTGCTGGTGACCCTGTGTGCTCCGATG
TTTCTTTCATTCATTTCCTTCCATTTGTCCTCATCTTTCTTCCACAGTCC
GGAAGAGCCATCTGCTTTTCAGTTGGTTCACTTTGGTGTTTGTTGCATGA
ACTGGAAAACTCCATAATTCTTCACATGCTTACAATGTTAGTAAAACACT
TCTCTGTGAGTGTTTGTGAGGACGTGTCCGGTGAACATTATTAGACTTTG
AGGGGGTTAAAGGAATGAATGGGTAAATCCCTGGGCGGATTCAACATAGG
ATGGCATTTTGAAAGCACAGGTAAGAGATTGTGACCTGGCGGAGTCAGTA
TTTAACACTCTGCATATCCTAAGAGCACCTTTGCTCCCCGGTGCCTTCTC
TGTATATCCCACTTTATTGTATTTAAAATGAGAAGCCTTCTCTTTTCCTC
TTGTCCTTTCAATTCATAATTTGCTGCCAAATCTCTTAAACCATTTATTT
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_n10.b1 MSMg01no090_n10.b1 CHROMAT_FILE:
MSMg01no090_n10.b1 PHD_FILE: MSMg01no090_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:08 2005
         (451 letters)



>mm_chr6_128789286_128790136
          Length = 851

 Score =  803 bits (415), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcaatctaggatggaagagatgtttagtttcaatcacctccattccatcccc 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 650 ggaattcttcaatctaggatggaagagctgtttagtttcaatcacctccattccatcccc 591

                                                                       
Query: 64  actgactgagaaaagcccggaagtccatggcggaatgaatcacaatccacctttgtcctc 123
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 actgactgagaaaagcctggaagtccatggcggaatgaatcacaatccacctttgtcctc 531

                                                                       
Query: 124 atcccacagtagcagaggctcttacgtccggctagtaggtggcatcacacccatcacctt 183
           |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||
Sbjct: 530 atcccacagtagcagaggctcttaggtcctgctagtaggtggtatcacacccatcacctt 471

                                                                       
Query: 184 tgacagaccttagaatcccatgcacttaggggtcttgaccacatgggggcataccagagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgacagaccttagaatcccatgcacttaggggtcttgaccacatgggggcataccagagg 411

                                                                       
Query: 244 tgcagtgacgagtcggtctttccggacctcggtcagtgagcagacaaacacaatggttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcagtgacgagtcggtctttccggacctcggtcagtgagcagacaaacacaatggttgc 351

                                                                       
Query: 304 cagagaggaggagagtggtcccatcctgcatgtgatggaatcgccacaaacaatctaggg 363
           |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 350 cagagacgaggagagtggtcccatcctggatgtgatggaatcgccacaaactatctaggg 291

                                                                       
Query: 364 aagggagaactctaagcaacctggtgaatagttgaggccagctgagcccaagagaagagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aagggagaactctaagcaacctggtgaatagttgaggccagctgagcccaagagaagagc 231

                                      
Query: 424 aaagctgtcaggagttcctaggtcctg 450
           |||||||||||||||||||||||||||
Sbjct: 230 aaagctgtcaggagttcctaggtcctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no090_n10.g1 MSMg01no090_n10.g1 CHROMAT_FILE:
MSMg01no090_n10.g1 PHD_FILE: MSMg01no090_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:08 2005
         (291 letters)



>mm_chr6_128710917_128711607
          Length = 691

 Score =  503 bits (260), Expect = e-147
 Identities = 281/288 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtattcctctttggcttgcactttcttgcagtacccagggctttttctagacaagca 60
           |||||||||||| ||||||||| || ||||||||| |||||||||||||||||  |||||
Sbjct: 201 tctgtattcctccttggcttgcgctctcttgcagtgcccagggctttttctaggtaagca 260

                                                                       
Query: 61  gacacaacggtccaggtaaagagactgcagaattagatctctagtgtgctggtgagggca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacaatggtccaggtaaagagactgcagaattagatctctagtgtgctggtgagggca 320

                                                                       
Query: 121 ggggagtgtgataaggtctcagggtgtctgctggtgaccctgtgtgctccgatgtttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagtgtgataaggtctcagggtgtctgctggtgaccctgtgtgctccgatgtttctt 380

                                                                       
Query: 181 tcattcatttccttccatttgtcctcatctttcttccacagtccggaagagccatctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcattcatttccttccatttgtcctcatctttcttccacagtccggaagagccatctgct 440

                                                           
Query: 241 tttcagttggttcactttggtgtttgttgcatgaactggaaaactcca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcagttggttcactttggtgtttgttgcatgaactggaaaactcca 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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