NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAAGACACAATCCACAGACTACATGAAGCTCAAGAAGAAGCAA
GACCAAAATCTGGGTGCTTCTGTCCTTCTTAGAAGGGGGAACAAAGTACT
CACCGGAGGAAATATGGAGACAAAGTATGGAGCAGAAACTTAAGGAAAGA
CCATTCAGAGACTGCGCCACCTGGGGAATCATCCCATGTATAGTCACCAA
ACCCAGACACTTGATGATGCCAAGAAGTGCTTGCTGAAAGGAGCCTGACA
TGACTGTCTCCTGAGAGGCTCTGCCAGAACCTTACAAATGCCCAAATGGT
GGTGGGGGGAAAATGGTGGGTGGCCTACTTACCTCCTATTTTCTCATACC
CCCATTTTCCCGACCCTCACCCCCTCACTCTTCCCCCCGTTCTTACCCCC
CCCCCTTCCTCCTTTATCCCTCTCATCTTCCCCTCCCCTTTTTCCCTTTC
ACCCCATCACTTTGGCTTGATCCTCCCATTCCTACCACCCATTCTCTTAT
CTTTGTCTCTTCCCTTCCCTTCTTTGTCCCCCTTATTTCTTCCCTTCGCG
CATCGTTATTTTTCCATTCCCCGCCGCTTTCTCCTTCTTTTCTCCGTACC
CCCCCCGCTCTCCTCCCCTCTACTATCTTTCCTCCCCCCCTCTCTTACCA
ACCCCGCCCGCCTAACGTTTTTTTTCTTC

NCCCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTTGTCATGTGGCCACTT
GTTCTGCTTGAAATTTCTCCTAATGCACACCTGCATTTTTCACATTATGT
TTAGTCTGTTACTTATAAATGTTCTTGCAATCTAATAGTGTCATTGGCTT
CATACAAAAGAGAAAATTGAGATTCAGAGGTTGACTATAGTTGTTGTTGT
TATTGTTGTTGTTGTTGTACTCTTTAATGAAGACAAGAATCAAGTCAAAA
ACCAAGGAAATAAATTTTGAGTATTTTAACTGGATCCAAATAAACCAGTC
CTAACGCAACATGGCAACCGACTTTGAAGACATCACTTTTGTCAATAAAT
ATTCTAGGAGATACAAATTACAATCCCATTTCCCAACTGAGCTTTTCTTT
CAACACGTCTCTAAAATTCTTCACTAATGAAGTACAAACTTTCATTATTA
ATATTCTCATAGGTTATATATAACAAAATAATTTTTACATTGGTTTAGAG
CCAAAAGAAACAAGTAAATGCTTTGCTAATCACCAGACAGATTTTTTTTT
TTTGAGCTCCTTATTATCTCCGACTTACATTTCCTCTAACCTACTCATTC
CCTCCCTGTCTTCCCTTTATTTAACCGCATTCGTTTCCATTACCCCCTTA
CCCACCCCTC

Query= MSMg01no091_f05.g1 MSMg01no091_f05.g1 CHROMAT_FILE:
MSMg01no091_f05.g1 PHD_FILE: MSMg01no091_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:48 2005
         (441 letters)



>mm_chr6_62479634_62480474
          Length = 841

 Score =  806 bits (417), Expect = 0.0
 Identities = 432/441 (97%), Gaps = 7/441 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtttgtcatgtggccacttgttctgcttgaaatttctcctaatgcacacctgcatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tggtttgtcatgtggccacttgttctgcttgaaatttctcctaatgcacacctgcatttt 724

                                                                       
Query: 61  tcacattatgtttagtctgttacttataaatgttcttgcaatctaatagtgtcattggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcacattatgtttagtctgttacttataaatgttcttgcaatctaatagtgtcattggct 664

                                                                       
Query: 121 tcatacaaaagagaaaattgagattcagaggttgactatagttgttgttgttattgttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcatacaaaagagaaaattgagattcagaggttgactatagttgttgttgttattgttgt 604

                                                                       
Query: 181 tgttgttgtactctttaatgaagacaagaatcaagtcaaaaaccaaggaaataaattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgttgttgtactctttaatgaagacaagaatcaagtcaaaaaccaaggaaataaattttg 544

                                                                       
Query: 241 agtattttaactggatccaaataaaccagtcctaacgcaacatggcaaccgactttgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agtattttaactggatccaaataaaccagtcctaacgcaacatggcaaccgactttgaag 484

                                                                       
Query: 301 acatcacttttgtcaataaatattctaggagatacaaattacaatcccatttcccaactg 360
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 483 acatcatttttgtcaataaatattctaggagatacaaattagaatcccatttcccaactg 424

                                                                       
Query: 361 agcttttctttcaacacgtctctaaaattcttcactaatgaagtacaaactttcattatt 420
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 423 agcttttctttcaacacgtctctaaaattcttc-------aagtacaaactttcattatt 371

                                
Query: 421 aatattctcataggttatata 441
           |||||||||||||||||||||
Sbjct: 370 aatattctcataggttatata 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)