BAC Information

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BAC

Clone NameMSMg01-092C04
Chromosome6 (Build37)
Map Location 93,535,518 - 93,535,832
singlet/doubletsinglet
Overlap genenone
Upstream genePrickle2, A730049H05Rik, LOC384461, LOC100043253
Downstream geneLOC665831, Magi1, LOC100043262, LOC665856, Slc25a26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092C04.T7 (MSMg01no092_c04.b1)MSMg01-092C04.TJ (MSMg01no092_c04.g1)
ACCAG309897AG309898
length714710
length of high quality
(start - end)
316 (70 - 385)133 (123 - 255)
definitionCHROMAT_FILE: MSMg01no092_c04.b1 PHD_FILE: MSMg01no092_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:53 2005CHROMAT_FILE: MSMg01no092_c04.g1 PHD_FILE: MSMg01no092_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCGAGAGGATCCGCG
GAATTCTGTCTATTCCGGGGCATGTTATTAAAGTCCTCTGATGGAGGCTG
AGAGAAAGACACCCCAGTGACACCCCTGTGAGGATGTTGTCCTGCACTAG
TGGCCGCCTATTCACCACAAGGTAATGGGTTGCCTTATAATGATGACAAA
TGGAATAAGCTTAACTGAGGGGTGGAAAACAGATCTTAATCATGGCTGCT
GTATCATGCAAATGCAGCCATCCCTGCTTCCATCCCTGACAACATATGCC
TGAAATTTTAGTTATATATGTCAGTAATCACTTCTCTGTGATAAAGGTAG
CTTGCGTTATGCTTCTGTCTTTGCTCATTCTCTGCAAATACTAAGATGAT
AAAAAGCCACTCAGCAAACATGTACAGAGTACTGACTAAATTGCCTAGCT
TGTTTGATAGGAGTCCTGGCATTAACCTAATGTATAAGGCTTATTCAGAT
CTGGTACTGGAGATCGATGTTAGTTATACTAGTACGCACTCTGACTCTGT
GTTGCCAGACTGTAAAATAGTCTTCATCTAATCTGTGACCCCCTATGATT
TTTTACATCCCTGCGTCTGATAATCCCTTTCTCGTCCCCCAAGAACTTGT
CTATCTACCTTTCCAGGTACAACCCTACGCATCCCTGTTCCTGCCTCCGC
TTTCTTTCACACGT
ATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAGTAGTAATGAATAATGTCCCTGATATAA
ATTTGGGAACATTCACCCAAGGAAAAACTGTGTGTCTGTGTTTGCCACCT
CGCTCCAGTCACATGTCTCTCTGCTGGCCACACTCCAGCGTTATGTTTTG
GAACAGTGGCATTGTTATCTCTCCACCACATGTCTCTCTGCTGGCCACAC
TCCAGCGTTATGTTTTGGAAGCAGTGGCATTGTTATCTGTAGAGAGAGCT
CATTCCTTTTAACTCTTGTGCAATGCTTTGTGGTTGGTTACCCTGCAGGC
TATATTTAATTTCTGGCAGATTCCAGCTTTTCTGCATATCAGGATGCTGC
CGTGCGCGCCCTTCTGAAGGCACTGTAGGGAATGTGAGATCGCTCCTCCG
TGTCAAAAAATGATATATATACCCATTACCCTACAGTGCCGTATAACACC
GTTACACTATGCCCTGATTTCACTCCGACTCTCCCATTTTTCAGACTCTA
CAATATATTTTTGCCGCATTTGTCTTCACCGCTCTTATTTGATCCATAGC
TCACCATTATTACTTTCTTGGACAGTTATAACTTGCTCTTTCCTTCTTTA
ACCGTGCTCTTAACTTTACAGATAACTGCGATCTTTATCTATTGCCCTCC
CTATGCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_c04.b1 MSMg01no092_c04.b1 CHROMAT_FILE:
MSMg01no092_c04.b1 PHD_FILE: MSMg01no092_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:53 2005
         (316 letters)



>mm_chr6_93535317_93536032
          Length = 716

 Score =  555 bits (287), Expect = e-162
 Identities = 308/315 (97%)
 Strand = Plus / Plus

                                                                       
Query: 2   catgttattaaagtcctctgatggaggctgagagaaagacaccccagtgacacccctgtg 61
           ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 202 catgttattaaagtcctctgatggaggctgagaaaaagataccccagtgacacccctgtg 261

                                                                       
Query: 62  aggatgttgtcctgcactagtggccgcctattcaccacaaggtaatgggttgccttataa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 262 aggatgttgtcctgcactagtggccgcctattcaccacaaggtaatgggttaccttagaa 321

                                                                       
Query: 122 tgatgacaaatggaataagcttaactgaggggtggaaaacagatcttaatcatggctgct 181
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgatgacaaatggaaaaagcttaactgaggggtggaaaacagatcttaatcatggctgct 381

                                                                       
Query: 182 gtatcatgcaaatgcagccatccctgcttccatccctgacaacatatgcctgaaatttta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtatcatgcaaatgcagccatccctgcttccatccctgacaacatatgcctgaaatttta 441

                                                                       
Query: 242 gttatatatgtcagtaatcacttctctgtgataaaggtagcttgcgttatgcttctgtct 301
           ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 442 gttatatatgtcagtaatcacttctctgtgataaaggcagcttgcattatgcttctgtct 501

                          
Query: 302 ttgctcattctctgc 316
           |||||||||||||||
Sbjct: 502 ttgctcattctctgc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)