Query= MSMg01no092_k16.b1 MSMg01no092_k16.b1 CHROMAT_FILE:
MSMg01no092_k16.b1 PHD_FILE: MSMg01no092_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:36 2005
(454 letters)
>mm_chr6_62990715_62991568
Length = 854
Score = 808 bits (418), Expect = 0.0
Identities = 445/454 (98%)
Strand = Plus / Plus
Query: 1 catcttttaagggggttatttgattttctggagtccaccctcttgagccctttatatata 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 catcttttaagggggttatttgattttctggagtccaccctcttgagttctttatatata 260
Query: 61 ttggattgtaatgaggtttctatatctgaaaattcttaagaggtatccaatatctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggattgtaatgaggtttctatatctgaaaattcttaagaggtatccaatatctgagat 320
Query: 121 gatgatttttgcttaagtacatgcattgttagttaatattcatgaaagatatctccatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgatttttgcttaagtacatgcattgttagttaatattcatgaaagatatctccatat 380
Query: 181 aagatattctaaactcatacttttaaatagattataaagcagtagtttttcatgcagtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagatattctaaactcatacttttaaatagattataaagcagtagtttttcatgcagtct 440
Query: 241 ttttttttttttgtcctcctcatgctcctttatctcacctagtctcccaccttctccctg 300
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctttgctttgtcctcctcatgctcctttatctcacctagtctcccaccttctccctg 500
Query: 301 attaagtattgccacttcccattttgccccttctgtactttcatattatttacagtgtgc 360
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 attaagtgttgccacttcccattttgccccttctgtattttcatattatttacagtgtgc 560
Query: 361 taccttccctttttaaggcatctctctcttcattgtactcattttagttttgtctatttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taccttccctttttaaggcatctctctcttcattgtactcattttagttttgtctatttc 620
Query: 421 aatagctactccaaattaaacacaaatcctaaag 454
||||||||||| ||||||||||||||||||||||
Sbjct: 621 aatagctactctaaattaaacacaaatcctaaag 654
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_k16.g1 MSMg01no092_k16.g1 CHROMAT_FILE:
MSMg01no092_k16.g1 PHD_FILE: MSMg01no092_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:36 2005
(482 letters)
>mm_chr6_63146081_63146963
Length = 883
Score = 895 bits (463), Expect = 0.0
Identities = 478/483 (98%), Gaps = 1/483 (0%)
Strand = Plus / Minus
Query: 1 tttcc-atattgagcctgtgaataatattattttgtttgtttttattttgctgttttctt 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttccaatattgagcctgtgaataatattattttgtttgtttttattttgctgttttctt 624
Query: 60 ctttatatttttgccgagaaaggataccaaacatagtcttagaatatcttctatataaga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctttatatttttgccgagaaaggataccaaacatagtcttagaatatcttctatataaga 564
Query: 120 aatcaaagaataatccaagaacacatagagggtataaataacaattagaatagaatcatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatcaaagaataatccaagaacacatagagggtataaataacaattagaatagaatcatt 504
Query: 180 agaggaatagtagtaattagaataccaaaataagtaatcactacaaaactgggttataat 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 503 agaggaatagtagtaattagaataccaaaatgagtaatcactacaaaactgggttataat 444
Query: 240 tcactaactggtattgaagtccatcaacccagtgaggaatactaaatatagaagtgtgta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcactaactggtattgaagtccatcaacccagtgaggaatactaaatatagaagtgtgta 384
Query: 300 aataattaagggggcactttttcaagaataaatggtcaatacatttttagaaagtttaga 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 aataattaagggggcactttttcaagaataaatggtcaatagatttttagaaagtttaga 324
Query: 360 aaaatctataagcaatctgaacaaaagtatctatagatacctttttgtaagtctagcaat 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 323 aaaatctataagcaatctgaacaaaagtatctatagatacctttttgcaagtctagcaat 264
Query: 420 tgaactatggactttgccctatgcaagactttatccctgagctacatagccattccttta 479
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgaactatggactttgccctaggcaagactttatccctgagctacatagccattccttta 204
Query: 480 agc 482
|||
Sbjct: 203 agc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 883
Length adjustment: 10
Effective length of query: 472
Effective length of database: 873
Effective search space: 412056
Effective search space used: 412056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
