BAC Information

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BAC

Clone NameMSMg01-093O23
Chromosome6 (Build37)
Map Location 74,929,346 - 74,929,616
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093O23.T7 (MSMg01no093_o23.b1)MSMg01-093O23.TJ (MSMg01no093_o23.g1)
ACCAG311244AG311245
length1,3451,232
length of high quality
(start - end)
---271 (123 - 393)
definitionCHROMAT_FILE: MSMg01no093_o23.b1 PHD_FILE: MSMg01no093_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:17 2005CHROMAT_FILE: MSMg01no093_o23.g1 PHD_FILE: MSMg01no093_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGGCGTAXXXXXXXXXXXXXXXXXXXXXXXXCGCGTAATTCTTAGAG
AGGAACCTTCCATTTCAGTTTACAACTGACTACCTTCAAGCTCTGTTTCT
CCTTTATGTGCTACCCCCAACAATAGGATTCTTATTTTAAGTTCTGCAGG
GCAATCAAGTATAACAGTCAATGCCCTATGCTATGTTGGTAGTCTCATTA
ACTCCTGAAATAACAGTTAACTATAATCTAGGTTTCCCAGTACATGGTAT
GGTTTAAATGGTTTGTTGTTGCTTTATTTTTGTTTTTTTTTTCTCGCTTT
CTTTTTATTTTCTTTCTTTTTTTTTTTTTTTTTCTTCTTTTTTTTTAATT
TTTTTATTATTTTTTTTATTTTTTTTTCTTTCCCCTTTTTTTTTTTTTTT
TTCTCTATTTTACTTTTCTTTTTTTTATATTTTTTTTCCTTTTATTCTCT
CTTTCTTTTTTCTCCCCCCCCTTTTTTTTTTATCTTTTATCTTTTTTAAA
AAATTTTTATTTTATTTTTTATTCTACTTTTTTTATTTTTTTTCTCTTTT
TTATTTTTTTTTCTCTTTTTTTTTCTCTATTTTTCTTCTTTTTTTTTTTT
TTTTTTCTTTTTTTTTTTTACTTTTTTTTTTCATTTATTTTTTTTTCTTT
TTCTCTTTTTTTTTTTACTTCTTTATTCTTTTTTTTCTTTCTATTACTTT
TTTTTTTTTTTTTTTTTTTTCCTATCTTTTTTATTTTTTTTTTTTTCTTT
TTTTTTTTTCTTTTTTCTTTTTTTTTTTGATTTTCTATTTTTTTCTTTTT
TTTTTTTATTCATTTATTAATTTTTCTATTATTTTTCTTTTTTTTTTCTT
TCTTTTTTTTTTTTTTCCCCTTTTTTTTTTTTTCTTTTTTTCTTTTATTT
ATATCTTTTTTTTTTTTATTTATATTTATTTTTTTCATTTTCTTTTTTTT
ATTTTCCTTTTCTCTTTCTTTTTTTCTTTTTTTTTTCTTTCCTTTTTTTT
TTTTTTTTTTTTCTTTCTTTTTTTCTTTTTTTTTTTCTTTTATTTTTTTT
TTCTTATCTTTTTTTCCTTTTTTTCTCTATTATTATATTTTTCTTTTCTT
TCTTTTATTCTTCTCTTCTATTTTATTTTTTTCTCTTTTTTTTTTTTTTT
TCTTATTCTTTCTTTTTTTTAACTTATTTATCTCTTTATTTTTATTTTTT
TTATTTTATTATTCTTATTATCTTCTTTATTTTGATTTTTCTATTCTATT
TCTATCTTTATTCTTTATTTTTATTACTCTTTTTCTTTTTTACATTTTTT
ATATTTTATCTCTTTTTAATTTCTTTTTTTACCTTTATTCTTTTT
NTTCCTACAAGGAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTTAGAGTACGACTAAACTACTCAGGATATTT
TCTGCTCCTTTCTCAGATGGCCGATGGGGATGTCAGAGACTCTGTTAGTT
TTATCACTTTCAAAACATGCATAGAATATCCTGCCATATCAAAGCTATGA
GGGTGGGCACTGGAATAAGTTACACTATTAGAATCCATGAAAAAAAATGA
ATAACACATCCATCATTTGTGTTTTAAAAGGGACTTCAATTGATTTTCTT
TTCTTTGCACGTGAAACCAACAGGTTGATTTTAGTAATCCCCACATGCTC
ACCCACTTATCACAGCTCTGTACATTGCAGAAACTATCATTCAATTTTTT
TTTCTTATACCATTATTGCGGATGGATTGACTATATTATGTCTACTTTTT
TTTTTTCCCCCCCCCCCCGTCTTTTTTGATCCTTCAAACAAAAAAATGTA
TTCGATATTTTCCTTTTTTTCCTCTCTATTATTCATTCCCCTTTCCTGTT
TTCCCCTTCTATCACTCTCATCTATTCTCCTTCTTCTTGTTTTCCATTCC
TCCCTTTCTCCGCTTTTTGTCTCTGTCTTTCTCCTATTCTGTTTCTTCTA
TCCTTCTTTTTCTTCCCTTTTTTTCTTCTTTGTTTATTTTTTTTTCTTTT
TTTTTTTATTTTTTTTATTTTTTTTTCTTTTTGTTTTCTTCTTTTTTTAT
CTCTCTTTTTTTTTTTCTTTATTTATTTATTTCCTTTCTTCTTTACTTTT
CTTTTTTTTTTCTTTCTTTTTCTTCTTTTCTCTTTTTTTTTTCCTTTTCT
TTTCTCTTTTCTTTTTTTCTCTTTTTTTTTTCTTTTTTTTTCTTTTTTTT
TTTTTTTTTATTCCTTTTATTTTTTTTTTTTTTTTCTTTCTCTTTTTTTA
TCTCCTTTTTTTCTTTTCTACCTCTTTTTTTTTTTTCTTTTTTCTTCCCT
TTTTTCTATCTTCTTTATTTTCTTCTTCTTTTTTTTTTTCCTTCTTACCT
TTCTTTTTTTCTTTTCTTCTTTTTTTTTTATTTTTTTTTCTTTCTTTCTC
TTTTCTCTTTTATNTTTTATCTCTTCTTTTATATTTTCTCTATCTTTATT
TTTTCCCTCTTTATTCTTTATTCTTTCTCCTTCTTAGTCTCTTTTTCCTT
TTTATTCTTTTGNTTTTCTTTTTATATATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_o23.g1 MSMg01no093_o23.g1 CHROMAT_FILE:
MSMg01no093_o23.g1 PHD_FILE: MSMg01no093_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:17 2005
         (271 letters)



>mm_chr6_74929146_74929816
          Length = 671

 Score =  493 bits (255), Expect = e-144
 Identities = 267/271 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatggggatgtcagagactctgttagttttatcactttcaaaacatgcatagaatatcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gatggggatgtcagagactctgttagttttatcactttcaaaacatgcatagaatatcat 260

                                                                       
Query: 61  gccatatcaaagctatgagggtgggcactggaataagttacactattagaatccatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccatatcaaagctatgagggtgggcactggaataagttacactattagaatccatgaaa 320

                                                                       
Query: 121 aaaaatgaataacacatccatcatttgtgttttaaaagggacttcaattgattttctttt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaatgaataaaacatccatcatttgtgttttaaaagggacttcaattgattttctttt 380

                                                                       
Query: 181 ctttgcacgtgaaaccaacaggttgattttagtaatccccacatgctcacccacttatca 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 ctttgcacgtgaaaccaacaggttgattttagtaatccccacatggtcacccacttatca 440

                                          
Query: 241 cagctctgtacattgcagaaactatcattca 271
           |||||||||| ||||||||||||||||||||
Sbjct: 441 cagctctgtagattgcagaaactatcattca 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)