BAC Information

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BAC

Clone NameMSMg01-094B20
Chromosome6 (Build37)
Map Location 115,049,339 - 115,049,603
singlet/doubletsinglet
Overlap geneLOC100043420
Upstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik
Downstream geneSyn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094B20.T7 (MSMg01no094_b20.b1)MSMg01-094B20.TJ (MSMg01no094_b20.g1)
ACCAG311375AG311376
length747692
length of high quality
(start - end)
268 (102 - 369)500 (56 - 555)
definitionCHROMAT_FILE: MSMg01no094_b20.b1 PHD_FILE: MSMg01no094_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:37 2005CHROMAT_FILE: MSMg01no094_b20.g1 PHD_FILE: MSMg01no094_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAANNNAAAAAATTAAAAAATTAANTTTATAAAAANTNNNNTTTTCGG
ACGNNNNTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCGCGGAATTCTCCCTTTACAAGATCCCTGGGTAATTCATGCATACCAT
AAAGCTGGAGACATAGTAAACTCTGACCGGTAATCTCTAGCTTCCTTTTA
CTTTATGTGTTGTTTGTCCTTGTTTTTGATGCAGGGTCTCACTACATATC
TCTGGCTAGCCTGGAACTTACAGAGACCCACCTCTCTCTGCTGCTTCCCA
CATGCTGGAATAAAAAAAAGCCTTGCCTATATGGTGAGCTACCATGCCTA
TATGGTGGTTAGCTTTAACTGTCATCTTGACACAATCTATAGTCACCTGG
GAAGGGACCCTTATTTTTATAGCCCCCACACCTGCCATGTCTGTGGGGAA
TTGTCTTGATTATGTTAACTGACAATGATAGACCACTGTGCATGCCACCA
TTCCCTTAACCAAGAGACACTGAATTTGTGAACGAGTATAGAAAACAAAC
TGAACATGCCCGAATTAATCAGTCTCTGCTCTTGACTGCGGATGCAATGA
CGTTGACTAGCCGCTCCTAGTTCCTGCTGCTTTCGATCCTCCATTGCCAT
TAACTATCATCTGATTTTATGAACTCTATTAACCCCATTCTCCTTTAAAT
TTGCCTTTATGGGTATCATTTCCTCACCTTCAACATCAAATAATATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGATATGCCTTTAGGTTGTTTTTTTTTGATTCTTTGTCTTTGTG
ACACCCTTTCATTATGTAGATCAGTCTGACCTGGAACTCACAGAGATGCA
CCTGCCTGCCTCCTGAGTGCTGTGATTAAAGTCATGTGCCACTATAACCA
GTCCCCTAATGTAATCACACTCTCTTCCTACCATCACTGACCCTTGGAAA
ACACTAATATATTCTGCATTTCTAAAATGTTGTATTTTCAAAATGTTATA
TTTATGGAGTTATGCAGGATGGGGACCGTCTTTAGGGGGATTTTCCTCTT
TGTCTCTGTGTAATCGGTTGGTAAATTCATCCATGCAGTTATATACATCA
ATAGTCCATCCCCTTGCTGAGCAAGCCTCTGTTGTGCCAACAGTCTGTGC
AGTCACTCATCTGTGGACAGACCTCTGGGACTCATCTTGGTTTTAAGCTA
TGCACACAAAGCTAGTGATGGACATTCACGCATGTAAATGTTCATCTTCA
TTATCAACTTGAAGTTCAGAACCACCATGGAAACATATATTGGATGTGTC
TATGGGTGGCGCCATCCCCTAGGCTGCGGTCCCAGACTGAATAATATTAG
GGATATGAACCTGATCACCGCTTTTTCCCTGCCCTCCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_b20.b1 MSMg01no094_b20.b1 CHROMAT_FILE:
MSMg01no094_b20.b1 PHD_FILE: MSMg01no094_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:37 2005
         (268 letters)



>mm_chr6_115049282_115049950
          Length = 669

 Score =  451 bits (233), Expect = e-131
 Identities = 257/265 (96%), Gaps = 2/265 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctcccttt-acaagatccctgggtaattcatgcataccataaagctggagacata 64
           ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 gaattctccctttaacaagatccctgggtaattcatgcgtaccataaagctggagacata 263

                                                                       
Query: 65  gtaaactctgaccggtaatctctagcttccttttactttatgtgttgtttgtccttgttt 124
           |||| ||||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaagctctgatagttaatctctagcttccttttactttatgtgttgtttgtccttgttt 203

                                                                       
Query: 125 ttgatgcagggtctcactacatatctctggctagcctggaacttacagagacccacctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttgatgcagggtctcactacatatctctggctagcctggaacttacagagacccacctct 143

                                                                       
Query: 185 ctctgctgcttcccacatgctggaataaaaaaaa-gccttgcctatatggtgagctacca 243
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 142 ctctgctgcttcccacatgctgggataaaaaaaaagccttgcctatatggtgagctacca 83

                                    
Query: 244 tgcctatatggtggttagctttaac 268
           |||||||||||||||||||||||||
Sbjct: 82  tgcctatatggtggttagctttaac 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 669
Length adjustment: 9
Effective length of query: 259
Effective length of database: 660
Effective search space:   170940
Effective search space used:   170940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)