BAC Information

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BAC

Clone NameMSMg01-094C16
Chromosome6 (Build37)
Map Location 16,919,579 - 16,919,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041116, Tcfec, EG435881
Downstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094C16.T7 (MSMg01no094_c16.b1)MSMg01-094C16.TJ (MSMg01no094_c16.g1)
ACCAG311412AG311413
length1,157688
length of high quality
(start - end)
---341 (56 - 396)
definitionCHROMAT_FILE: MSMg01no094_c16.b1 PHD_FILE: MSMg01no094_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:41 2005CHROMAT_FILE: MSMg01no094_c16.g1 PHD_FILE: MSMg01no094_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNCCCCCCNNTTTTCCCCNNNNTTTTTCCNNN
NATTTAAAANNTNNNNTNANNACCTCATCGACNTCCGCGATATCTAATAG
TTGTGGTGGGTCGTCTTAAAACGGACTGCGTTTACTCGGCGGAGGAGTGG
ATCCGGCGTAGAATGTCTACATCGCCTTCGGCGCGGGCGTGTTCCCTTCC
GAATNCCAACACGCCGTTAAACTGAATTCGAAGTACTAGGCCTGCCTCCA
GAGGGAGTGCGCATCTTCGTCCCCATAATAGAACGGTCTATATGCCCTAC
ATATACCCCGGTTATTCTTTCCTTGTCCGACCTTGGTGCGGTGAGAATGC
GCGTCATGGGTGGTGTGAGGATGTGGCGAAGACAGCAGGTGGATGGTTAG
GTCTGGAATGGAGGAAACAGTAGGGGCTCATGAGTTTGGTTCATTCACCC
GCACGCGCATCGCATATTTATCCCTGTATGAAGTCCATAACGTGTTTTAG
TCGCGGTACCAGTAACGGACAGTTTCTTAACAACTCGCGTAAGAGTTTCC
CTGAGCCGTTAGACGCCTGTGCGTCCGCTAGGAGACGTGGGCGGTATGGG
TGTGGGCGCGTGTAATGGGCCGTAGTTGGATCATTTAGTCGTGGTGTGCC
GCTGTGCGCGTCGAGCGCTGACGATGTTACTTAAGGAACACAGAAACCGC
ACAGAGAAGGCTTGTGTGTGTCGCACGGATATATTCAGTGCTGCGAATGG
CATACGCTAGTCTCGCACCGTAGGCGTTATATATCACTGGAAATATCCCA
GCGAGACCCTGATGTATAATTATCTCGCTCCAAATTAGCAATCGCTGGAA
CGGCAGGCGTACGGGACATAGAGGCAGACGATTCAATAACGGTTAGGCGA
GCTATCTATATTGGCAGATACCACTAACTTGCACCGAATATACAGCACGG
GTATATTATATTATACACATCTTCGGCGGGGGTGGCGTGCTCGTGACGTT
GTGTTTTGACTTGCGTCTCTTGTACGGCCGATTCGTTGTTTCGCTTATGT
GCCGTGTATACGGGTCGTGGCGGTGCGATTGAGCATACCACGCTTTCGAG
GATAATAGCCTGATGTATAATGTAAGCGATTGCCCTTAAGTGTGATCATC
TGACAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTTGAAAAGAGCTAATGAAGTGGACAGTGTGTAAACCAGTAAAT
CCTAAATTTGCATTTTAAATATTTACTTCCACTCATGAGTGTTTTCTCCT
TTACTTTGTGGACTCAGTTATGTTTTTCCTCCTCGTGATAAAATGTTGAA
GTCCTATCTCCTGATGTGTATATATCCTGATGTGTATATATTCCGTCTTC
TTTGAAACAGAGCCTTTCAGTGTAGCATTTGCACAGATTCAGTTGGTGGT
ATATTGGAATATTGCACAGTCATTAACCTTGGATGCTGGAGGACAGAGAC
AGAGAACATAGACACAAAAAGACAAATGTGTTGTAGAAATTATTAAGATC
CCAGCTGAGGCTTATCTATAGTCAGAAACTAGAGTTACTCTATGAGGGAA
GTCTGCATTTCTCTATCTAAACCATTGATAATTGATCTTTATTTCCAGCT
TATGAAACTAAAAATGTAGTTCTGCTTTGTGGCAACTGGCTAGAACATTA
TAGTATCATTCTATAATAAGGAATATGTCCTGTACTGTCCTTACATTATC
TTCCCCATTATCGAACTACAATCCAGTCCCCACAATTCCTTGCTATGCCT
TTCCTTGATAATTCTTTGTGACTACCACTTATATTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_c16.g1 MSMg01no094_c16.g1 CHROMAT_FILE:
MSMg01no094_c16.g1 PHD_FILE: MSMg01no094_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:42 2005
         (341 letters)



>mm_chr6_16919379_16920119
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaaaagagctaatgaagtggacagtgtgtaaaccagtaaatcctaaatttgcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaaaagagctaatgaagtggacagtgtgtaaaccagtaaatcctaaatttgcattt 260

                                                                       
Query: 61  taaatatttacttccactcatgagtgttttctcctttactttgtggactcagttatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatatttacttccactcatgagtgttttctcctttactttgtggactcagttatgttt 320

                                                                       
Query: 121 ttcctcctcgtgataaaatgttgaagtcctatctcctgatgtgtatatatcctgatgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctcctcgtgataaaatgttgaagtcctatctcctgatgtgtatatatcctgatgtgt 380

                                                                       
Query: 181 atatattccgtcttctttgaaacagagcctttcagtgtagcatttgcacagattcagttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatattccgtcttctttgaaacagagcctttcagtgtagcatttgcacagattcagttg 440

                                                                       
Query: 241 gtggtatattggaatattgcacagtcattaaccttggatgctggaggacagagacagaga 300
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gtggtgtattggaatattgcacagtcattaacctcggatgctggaggacagagacagaga 500

                                                    
Query: 301 acatagacacaaaaagacaaatgtgttgtagaaattattaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatagacacaaaaagacaaatgtgttgtagaaattattaa 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)