BAC Information

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BAC

Clone NameMSMg01-094H01
Chromosome6 (Build37)
Map Location 135,928,270 - 135,928,573
singlet/doubletsinglet
Overlap geneGrin2b
Upstream geneApold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H01.T7 (MSMg01no094_h01.b1)MSMg01-094H01.TJ (MSMg01no094_h01.g1)
ACCAG311613AG311614
length827691
length of high quality
(start - end)
49 (164 - 212)304 (57 - 360)
definitionCHROMAT_FILE: MSMg01no094_h01.b1 PHD_FILE: MSMg01no094_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:05 2005CHROMAT_FILE: MSMg01no094_h01.g1 PHD_FILE: MSMg01no094_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTTCTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTACCACCGAATATATTTGCTAAGAATGAATTAAAACTTTTCAGGAAA
ATGAGAAGCTGACTCTCCATCAACCACAGACTCTCACCAAAGAACTTGCT
GCTATTCTGACTTACGCAGAAGGAACCAAAGCCTAAGCCATACTGTCATG
AGCTACAAGATGGAGTGAAGAATGGGTAGGCAGGTGTGTGAGTGAACTTA
AAATGAGCATTAAGTGTATTCAATCCCATCAAAGATAACACACTGAGAAA
TGCTCATCCAAGATGTACTTTTAACTTATGCAGGCAGGTCCAGAGGCTTA
TAGTGTCCTCTGATGCCTACCGTTCCTGATATAAGGCTAACGGCATTTAG
ATACTTCATGATGCGATAAAAATAAGCACACATGTTTTTAATTCTACTGT
TCAAACTTCCCCTAATAAACCCACCAATAACCAATACTCCTCCACTTCTA
TATCCCCCCATCCCCCTTATAACCCCTTTCCCCCATCTTCCTTTTCTTTT
CTATCTGCACTTTCCTCTCTTCTACTTACTTCACCAATATTTCTCTATCC
TCCTCCACCTATTTCTTCTCTATCTTCCTCTCACTTCTCCCTAACTTATC
ACCCCTCTCATACCTACAATTCCGCCTTCGACTCTACATTCCCATTTCTT
TTTTTTCTTGCTCCCCTACGTACCTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAAAGAGCGGGAGCACAGAGTAATGTAGGCTTTCCAACATGAGT
AGTAAGTACCCTGACACCTATCCACAAATGGCCAAGGGAACAGACGACCT
TGTGCTGACTTCCCAGGCAGGTGGAGAGAAAATGAATCTACCCTTTGTTA
AGAAAGTAAATGCCATTGGCCAAATAAAATGGTTCAATAAAAATAAAGAC
TACTAAGAATTCCTTTTGCATGAAGTCATGGATGAAGAAGTCAACATGTC
AATTTCAAGTTATCCTTTGGAAAAACATTTCAAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGATAGA
AACACTGATAGAAAGAAAGATAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAATGTAGCCATGCTGAGCTGCCCCTTATTCAACTTT
CCCTGGGAGTTTTAGCAAAGGACCCATACCCAGAATTTCTGTCCCCTCTG
GTCTCTAGGGCATGTTGTAAGACTTTTGTTAAACTGATTTTGCTCTAGTC
TTACAAACTATACACACAGCCTTATACCAAGAGTTGCCACTCTGCTGTAT
AGACTTCTGTACGTCTGAAGGAGTAGACAGAGATCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h01.g1 MSMg01no094_h01.g1 CHROMAT_FILE:
MSMg01no094_h01.g1 PHD_FILE: MSMg01no094_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:05 2005
         (304 letters)



>mm_chr6_135928070_135928773
          Length = 704

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaagagcgggagcacagagtaatgtaggctttccaacatgagtagtaagtaccctgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaagagcgggagcacagagtaatgtaggctttccaacatgagtagtaagtaccctgaca 260

                                                                       
Query: 61  cctatccacaaatggccaagggaacagacgaccttgtgctgacttcccaggcaggtggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctatccacaaatggccaagggaacagacgaccttgtgctgacttcccaggcaggtggag 320

                                                                       
Query: 121 agaaaatgaatctaccctttgttaagaaagtaaatgccattggccaaataaaatggttca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 agaaaatgaatctaccctttgttaagaaagcaaatgccattggccaaataaaatggttca 380

                                                                       
Query: 181 ataaaaataaagactactaagaattccttttgcatgaagtcatggatgaagaagtcaaca 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaaataaagactacaaagaattccttttgcatgaagtcatggatgaagaagtcaaca 440

                                                                       
Query: 241 tgtcaatttcaagttatcctttggaaaaacatttcaaaggaaggaaggaaggaaggaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcaatttcaagttatcctttggaaaaacatttcaaaggaaggaaggaaggaaggaagg 500

               
Query: 301 aagg 304
           ||||
Sbjct: 501 aagg 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)