BAC Information

Click to search

BAC

Clone NameMSMg01-094H19
Chromosome6 (Build37)
Map Location 110,782,622 - 110,783,163
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094H19.T7 (MSMg01no094_h19.b1)MSMg01-094H19.TJ (MSMg01no094_h19.g1)
ACCAG311644AG311645
length1,750682
length of high quality
(start - end)
---555 (55 - 609)
definitionCHROMAT_FILE: MSMg01no094_h19.b1 PHD_FILE: MSMg01no094_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:09 2005CHROMAT_FILE: MSMg01no094_h19.g1 PHD_FILE: MSMg01no094_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAAAAAAAATATAAAANNNNNNNNTTTTTTATTNTTATTATATTA
TTNTNTATATATTATNNTNTTATTTNTTATTNATTTATTNTTAATTATAT
AATANTNNNTTTTTATATAATTAATANNNATATAAAACAANATATAATAN
NNTAANNNNACTNATNTTAGTGNACCGTACACCCTCTCCCCACGCGATTT
ATATTATAATACTGTATATATGACACCGCGAATATAAATATAATATTAAT
AATTATCNNTTTTTTTTATGCGTGTCGCCTTGTCTCTGCACTACGTCTGT
GCCTTTGTGCGCGCTGTGTGCTGCGCGGNCGTGGTGTCTGAGGCGTCGCT
CGCGCAGACGTGATCACCGTGCTTAATCGTATNTTGTTGACNGCGTAGTG
TGGTGNATACTGCGGNTGAGATGCGCGCCTGACCGCACGTGCCGTGTGCA
CGTACACGCGGACAGGCGACTGTGTCGGTGAGATGATGTACAAGACGACG
AGATATGTGACAGATGGCTACACCACATATTACTACAACACAATTATACA
CATATCACCCGCACGCGCGCACGTGTGTTCTACCTATGTATTCGACGCTG
ATGCATTATGTACTGCGNCGCAACGCCAGACGCTTGGCGCGGCGCGAGGG
GTCGAGCTGTGTTGTGTGCCGCGCTATCACGGCGGGGTGTGGAGCAGCGT
ACGGTGTCGCGAGAGGAGCGCGCTGATCAGNCACGCAGAAGGCACCGCAG
CGTGCTCGCTGGTGACTGAAGGCTGAGGTGTGAGCGCGATCGGGCGCCGC
GATGCGACACGGTGATATGGTCTATGGTTGCGTTCCGCGTGCCGACGTAT
CGCGCACCACCGGCTACATTAACGCATTCTCTTATCTCCGCACGTCGACA
TGCGCACGATAAGTGCACCACACGTCGGGCACTAGCGATCGACTCGATCA
GTGTTGTGATGCTCTGCATCGCTATAGATGATGTGCACGATAGACGGGTG
GTGTTNGCGCACGGCTAGTGCTCCGCGGCGCGCTATACGCATCTCTATGC
TAACAGCTACGCTGTACACGCTACGCGAGTCGTATGTCTGTCGTATACTC
TCCATGCACGCGCTGACTGCACTATATATGNCATCTATAACGTCGGTTTA
GTGTGAAGNGTCGATGTCGTGAGCGCGCTGAGGCGTCGTGGCAGGCATGA
GACACGATGATCAGAGGTGAGGACACATGTGACGAGACGCAGCGGTGATC
TGACAGCAGCGGCCGAACGAGCTGCATGCGTGTCAGTGAGCGCTGTTGTG
GAGCGCGCACGCGCCTGCGCGAGCCTTGCANGTATGTGTACGGATGAACA
ACGTGAGNACGCGCGCGCAGCTGCACTGTGTCGAGCGGCGACGCTGTCAT
TATATGTGTGTGCACGCTCATATGCTGACACTCGTACACTCTGGATNACG
CGCACGACCGATATAATCAATTAATCATCGACGGNCACTACTTGTATCTG
TCGCGTCTGTNCTCACGGTGNTCACTATATACTGCGCACATGCCTGCTCT
GCTCGTGCTGCTTGCATCTACGCCAGCCGCCGCGCGCATGGCTCGCGCGC
CGATAGCTATCGCGTGTGGATCTGTATTTGCGCNGCGTGCGCACTGCGGC
TAGTGGTCGTGCGTATGCGTNGTCGTGNANGNTGCGTGCGTATGCACTCA
CGGATGACNATGCGACGCTNACAGCATACTGAATCATACGTACGCTGCGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTTGTAAATAAGGCATATGTGTCACCATAATGTGGGTGTCACACTC
ATTCATGATTTTTTTTTCTCATCCGATTATGGTCCTATGTCATCAAGTAT
TAATTAAACACAAACTTCATTCATTCCCAGCTGGTGACAACAGTTTTTTT
TCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTCTTTTTTCTGTTTTCTGT
TTTTCCTATTGTCCCAGATATCTACACTTGTATTGTCTAGCACTTTCTCC
TTGAACCAGTTTTGATCATAAACATTGTTCTGGCCATGCTCTGTGTTCTG
TGGCTTATTTATGTTGGAAATACATCTTTTCTGTTAAGCCAAAATAATAT
TAGGATTGCTTTCTCTGGTGAATGAAACAAAGACCAGCAGTTGTACAGAT
CTGAGATGTTTTGCCCTCAATCCTATTTTTCTCATAAACCTTATTATTTT
TATTGATGTTGCAGAATTCATAGTTCTGAGCACTGCATATATTTCATTAC
AGCTGCTAGACCTCTCTTTTTAATTTCAAGTGTCAAGATCGCAATCTAAA
CCACCTCAGAGAAAATGACAATATATTAAATCATATACCTGGAAAGGTCA
AGGGTTTCACTAACTTCAGGCATTTCTCGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_h19.g1 MSMg01no094_h19.g1 CHROMAT_FILE:
MSMg01no094_h19.g1 PHD_FILE: MSMg01no094_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:09 2005
         (555 letters)



>mm_chr6_110782422_110783376
          Length = 955

 Score =  969 bits (501), Expect = 0.0
 Identities = 536/555 (96%), Gaps = 13/555 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtaaataaggcatatgtgtcaccataatgtgggtgtcacactcattcatgatttttt 60
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 201 cttgtaaataaggcatatgtgtcaccataatgtgggtatcccactcattcatgatttttt 260

                                                                       
Query: 61  tttctcatccgattatggtcctatgtcatcaagtattaattaaacacaaacttcattcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcatccgattatggtcctatgtcatcaagtattaattaaacacaaacttcattcat 320

                                                                       
Query: 121 tcccagctggtgacaacagttttttttctttttctttttctttttctttttcttttttct 180
           ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||
Sbjct: 321 tcccagctggtgacaacagttt------tttttctttttctttttctttttcttttttct 374

                                                                       
Query: 181 tttttctgttttctgtttttcctattgtcccagatatctacacttgtattgtctagcact 240
           |       ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 t-------ttttctgtttttcctattgtcccagatatctacacttgtattgtctagcact 427

                                                                       
Query: 241 ttctccttgaaccagttttgatcataaacattgttctggccatgctctgtgttctgtggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 428 ttctccttgaaccagttttgatcataaacattgttctggccatgctctgtgctctgtggc 487

                                                                       
Query: 301 ttatttatgttggaaatacatcttttctgttaagccaaaataatattaggattgctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttatttatgttggaaatacatcttttctgttaagccaaaataatattaggattgctttct 547

                                                                       
Query: 361 ctggtgaatgaaacaaagaccagcagttgtacagatctgagatgttttgccctcaatcct 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctggtgaatgaaacatagaccagcagttgtacagatctgagatgttttgccctcaatcct 607

                                                                       
Query: 421 atttttctcataaaccttattatttttattgatgttgcagaattcatagttctgagcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 atttttctcataaaccttattatttttattgatgttgcagaattcatagttctgagcact 667

                                                                       
Query: 481 gcatatatttcattacagctgctagacctctctttttaatttcaagtgtcaagatcgcaa 540
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 668 gcatatatttcattacagctgctagacctctctttttagtttcaagtgtcaaaatcgcaa 727

                          
Query: 541 tctaaaccacctcag 555
           |||||||||||||||
Sbjct: 728 tctaaaccacctcag 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)