BAC Information

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BAC

Clone NameMSMg01-094N21
Chromosome6 (Build37)
Map Location 27,427,127 - 27,427,508
singlet/doubletsinglet
Overlap geneGrm8
Upstream geneLOC100041247
Downstream gene6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N21.T7 (MSMg01no094_n21.b1)MSMg01-094N21.TJ (MSMg01no094_n21.g1)
ACCAG311921AG311922
length983688
length of high quality
(start - end)
---410 (54 - 463)
definitionCHROMAT_FILE: MSMg01no094_n21.b1 PHD_FILE: MSMg01no094_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:41 2005CHROMAT_FILE: MSMg01no094_n21.g1 PHD_FILE: MSMg01no094_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATTTTTTTNNAAAATTAATTTTTAATATTTTTAATNAATTTNTNNN
NNNNNGTCTATTTTTTTTGTTCTGTAACTTTTGGAGNNNNTCTTTGAGAA
ANNNCTTCGTTTTTTAAGAAGATTCCAAAAGAANNTCCCTTTTTTTATAA
AGAGGGGGAAAGGGGNNNNNNNNNNNNANCCACAAAAAAANAGATTTTTT
TCCCTTAAAATAGGGGAAGGGGTNTTTTTTTTTGTATTTTTTATTTTTTT
TTTTATTCTTTTCTAAATTTTAAACTCATTAAGTATTTTTTTTTTTTTTT
TTCTCCCTTTTTTTTTATTATAATATTGGAGGTGATTTTTACAACATCCA
ATACACTGGAGTTCTATTCTTACATAACCCATTTCCTTCGCTTATTTTTT
TCCTTTATCTTATTTTCTAATTTTCCTTATCTTCCACTTCCACCTTCTTT
TCTTTTTTTTTTCTATTTTTATTTTTTCCGTTTCCTATTCCCGCTTTATT
TTTTTTTTTATTTTTTCCCCACCCCCCCTCCTTCATTTATCTCCTTTTTT
TTTTTTCATTTTTTATTTATGTTTTGCTCTTTTTCCCAAAAAAATAAAAT
AATTATTTTTTTTGTTGTGTGGGGGGGGGGTTTTTCTTTTTTCTATTTTT
CTATTCTTCTTTTTTTTTTACTTTTTTTTACTTTTATTCTTTAGTAATAT
TTTTTTTTTTATCTTTTTTTTATTTTTTTTCTTTTATTTTATTTTTCTTT
TTTATCCTTATTTTTTATTCGCCTTCTTTTTCGCTCTTTATTATCTTTTT
CGTACTTTTTCTTTTTTGTCTCTTTCTTATTTTCTCCTCCTTTTACTACT
TTTTTTATTTTATTATGCCTCTTTTTCTTTTATTTCTTTCCCCTTTTTTT
TCTCTTTTTTTTCTATATTTTCTAATCTTTATGTTATATGCTTTTTCCTG
TTTATGTTATGTTCACTTTTCTTTTTTTATATN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTCTAAAACTTCTATGCACAGAGAAATATATTTTGCATGCTGTATAAG
ACGAGAATGCATGAGACCCTAAAACTCAGAAGAGGCAGAGACTGCATCTC
TCTAAAATGCTGTGTAGGTGCAGGAAAATAAGTTTTCAGCTCATAAAGGA
TAAACTCCTCCATGTTCTTCATTTTTGCTCTGTTCTCCCTGAAGTCAGAA
ACTAAATGCAATTATGTGAAGAGAGGCTAAGGCCACAGTGGCTTTTTTTT
TTTTTAAAGAACAACAACTGGAGGCCAAAATTCACCAGACTACTGAGAAA
GTATTTACTACAACTAAAGTCTATGAGTTTGCAAGGAGAATATGTGAAAA
ATAAAAAAGCAAGGAGAAGCCGGCAGAACAAGTAGACTAGACTCTGCTGA
GTGGAGTTGACGGAATAACGTGTGCTGAGAACACAATTGCTGAGGCAGTC
CAGGAGCCACAGGCTGAATTATAGCTTACAAAGTAACAGAAGGTAGTTCC
CCGCAGAAATTAAATGTAGAGAATTTAGAACCTATTATTGATAAGGGCAT
GCCCCTCCAGGGACTAAAGAAAATGACCTGACCTTGAACTTGAAGTATGC
ATTACCATGAATTATAATGAAGAAAATCCGTGAGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n21.g1 MSMg01no094_n21.g1 CHROMAT_FILE:
MSMg01no094_n21.g1 PHD_FILE: MSMg01no094_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:41 2005
         (410 letters)



>mm_chr6_27426927_27427736
          Length = 810

 Score =  658 bits (340), Expect = 0.0
 Identities = 379/410 (92%), Gaps = 28/410 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaacttctatgcacagagaaatatattttgcatgctgtataagacgagaatgcatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tctaaaacttctatgcacagagaaatatattttgcatgctgtataagatgagaatgcatg 260

                                                                       
Query: 61  agaccctaaaactcagaagaggcagagactgcatctctctaaaatgctgtgtaggtgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaccctaaaactcagaagaggcagagactgcatctctctaaaatgctgtgtaggtgcag 320

                                                                       
Query: 121 gaaaataagttttcagctcataaaggataaactcctccatgttcttcatttttgctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaataagttttcagctcataaaggataaactcctccatgttcttcatttttgctctgt 380

                                                                       
Query: 181 tctccctgaagtcagaaactaaatgcaattatgtgaagagaggctaaggccacagtggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctccctgaagtcagaaactaaatgcaattatgtgaagagaggctaaggccacagtggct 440

                                                                       
Query: 241 ttttttttttttaaagaacaacaactggaggccaaaattcaccagactactgagaaagta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ttttttttttttaaagaacaacaactggaggccaaaattcaccagactactgagaaagga 500

                                                                       
Query: 301 tttactacaactaaagtctatgagtttgcaaggagaatatgtgaaaaataaaaaagcaag 360
           |||||||||||||||| ||||||||||||||||||||                       
Sbjct: 501 tttactacaactaaagcctatgagtttgcaaggagaa----------------------- 537

                                                             
Query: 361 gagaagccggcagaacaagtagactagactctgctgagtggagttgacgg 410
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 -----gccggcagaacaagtagactagactctgctgagtggagttgacgg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)