BAC Information

Click to search

BAC

Clone NameMSMg01-095A04
Chromosome6 (Build37)
Map Location 85,128,160 - 85,128,664
singlet/doubletsinglet
Overlap genenone
Upstream geneDysf, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089
Downstream geneEmx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095A04.T7 (MSMg01no095_a04.b1)MSMg01-095A04.TJ (MSMg01no095_a04.g1)
ACCAG312029AG312030
length704709
length of high quality
(start - end)
662 (37 - 698)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no095_a04.b1 PHD_FILE: MSMg01no095_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:53 2005CHROMAT_FILE: MSMg01no095_a04.g1 PHD_FILE: MSMg01no095_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGA
CCTTCATGTTAGAGAAGCCTAAAAGATCCAGAAACTAAAAATGTAGTAAC
TGCTCCAAACTCCCAGACAAACACGTAGCAGTGGAAAACATTTGTAAACC
AAATAATACTCACAGACAAAGTTCTAAGAAAGGGTGTGTGGTTCATGCCT
TTAATCCCAGCACTTCGGAGGTAGATGCAGGAGGATCTCCAAATTAGAGG
TCAGCCTGGCCTACAAAGTGAGTTCCAGGACAACCAGTGCTACACAGAGA
AACCCTGCCTTAAAACAAAACAAAACAAAACAAAACAAAGCAAAACAAAA
CAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAGCTCTAAG
GAAGGTTAAATGTGAGGGGGCAGTGCACAAAATACATAGAGACAAAATTA
TCGTGAGAGGTGGCTAAACCCATAAACTATAGATCAGATTTGCAAAAACC
AACATAAATTAGAATTTAGAAAGCTGGCACTTTAGCTCAGTGGTAGATTG
TGTGTCCAGATTCAAGGGGTGTTGGATTTCAGCAGCTAGAGTAAGGGAGA
AGAAATAAGGAACACAGAATATTGAATATCCTACCCAAAAAGCCCCAAAA
TGGTATTAAGCAAAAATTTAAGGATCAGCAAGAGGACTTACTGGGTGAGG
GCAC
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAGTCATCCTAGACTACATATAACAAG
TTCAAAGACACCCCTGAACAACAACAAAAAAAAGTAAGAGGGAAGTAAGA
ACGGCATGGAGGAGAGGAAACAATGAAAAGTGACTTACAGAATGTGTTTC
TCTGGGAAAAGATAAAACGGTTCTAAATTAGACTATGGTCATTGTTGCTC
AACTCTGTGAATATACTGCACGTCATTCAGTCACATGTTCTAAACAATAT
GTAAATCATGTTATACGAATTATAGCTCAACAAAGCTACTTTTTTCAGAT
GGGATTTCATATCCCCCTGGCTGGTTTTAAACTTGCTGTGTAGGCAACCA
TGACCCTGAGCTCCCAATCTTCCTGCCTCCACCATCTAAGTGCTGAGATT
GCAGGCATGAACCTCCACACCCAGCTATAAAAATACTTTTTAAATGGCAA
TATATGTCAGTATTCAAGTTAAAAATTTAAAAACAAAAATTTAGATACAA
TTAGAGTGAATGCTAATTGCTCTGACCCATCAATCAAAATAAGGAAATGA
CTACTATTAATTAAATGTGATGTATAAAAGATGGAGAGATGGCTTAGCGT
TTGAGAGCACTACCTACTACTCTTCCAGAGGACCCAGGTTCAATTCCCAG
TATCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_a04.b1 MSMg01no095_a04.b1 CHROMAT_FILE:
MSMg01no095_a04.b1 PHD_FILE: MSMg01no095_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:53 2005
         (662 letters)



>mm_chr6_85127604_85128664
          Length = 1061

 Score =  801 bits (414), Expect = 0.0
 Identities = 494/546 (90%), Gaps = 41/546 (7%)
 Strand = Plus / Minus

                                                                        
Query: 117  ataatactcacagacaaagttctaagaaagggtgtgtggttcatgcctttaatcccagca 176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 ataatactcacagacaaagttctaagaaagggtgtgtggttcatgcctttaatcccagca 1002

                                                                        
Query: 177  cttcggaggtagatgcaggaggatctccaaattagaggtcagcctggcctacaaagtgag 236
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 1001 cttcggaggtagatgcaggaggatctccaaattagagaccagcctggcctacaaagtgag 942

                                                                        
Query: 237  ttccaggacaaccagtgctacacagagaaaccctgccttaaaacaaaacaaaacaaaaca 296
            |||||||||||||||||||||||||||||||||||||||               ||||||
Sbjct: 941  ttccaggacaaccagtgctacacagagaaaccctgcctt---------------aaaaca 897

                                                                        
Query: 297  aaacaaagcaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca 356
            ||||||||                         |||| |||| |||||||||||||||||
Sbjct: 896  aaacaaag-------------------------caaagcaaagcaaaacaaaacaaaaca 862

                                                                        
Query: 357  gctctaaggaaggttaaatgtgagggggcagtgcacaaaatacatagagacaaaattatc 416
            |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861  gctcaaagaaaggttaaatgtgagggggcagtgcacaaaatacatagagacaaaattatc 802

                                                                        
Query: 417  gtgagaggtggctaaacccataaactatagatcagatttgcaaaaaccaacataaattag 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801  gtgagaggtggctaaacccataaactatagatcagatttgcaaaaaccaacataaattag 742

                                                                        
Query: 477  aatttagaaagctggcactttagctcagtggtagattgtgtgtccagattcaaggggtgt 536
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741  aatttagaaagctggtgctttagctcagtggtagattgtgtgtccagattcaaggggtgt 682

                                                                        
Query: 537  tggatttcagcagctagagtaagggagaagaaataaggaacacagaatattgaatatcct 596
            || |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681  tgtatttcaacagctagagcaagggagaagaaataaggaacacagaatattgaatatcct 622

                                                                        
Query: 597  acccaaaaagccccaaaatggtattaagcaaaaatttaaggatcagcaagaggacttact 656
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621  acc-aaaaagccccaaaatggtattaagcaaaaatttaaggatcagcaagaggacttact 563

                  
Query: 657  gggtga 662
            ||||||
Sbjct: 562  gggtga 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1061
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1051
Effective search space:   685252
Effective search space used:   685252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)