Query= MSMg01no095_k05.b1 MSMg01no095_k05.b1 CHROMAT_FILE:
MSMg01no095_k05.b1 PHD_FILE: MSMg01no095_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:43 2005
(576 letters)
>mm_chr6_89098644_89099618
Length = 975
Score = 1083 bits (560), Expect = 0.0
Identities = 569/572 (99%), Gaps = 2/572 (0%)
Strand = Plus / Plus
Query: 5 gaattctaactgtatttctaaaattttgaaacagagtgtctgtgtagcccaggttaacct 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctaactgtattt-taaaattttgaaacagagtgtctgtgtagcccaggttaacct 264
Query: 65 tgaactcacaatcctcctgcctcaggccctagagtgatgagaagacacgattgagccaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaactcacaatcctcctgcctcaggccctagagtgatgagaagacacgattgagccaac 324
Query: 125 acgctcggccatttccacactgttatttgaagaatttcagttgtaagaaataataggaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acgctcggccatttccacactgttatttgaagaatttcagttgtaagaaataataggaag 384
Query: 185 aatggatactgtatttttttaaatctaaatataaagacagataatcccccctgaccccat 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 aatggatactgtatttttttaaatctaaatataaagacagataatccccc-tgaccccat 443
Query: 245 gtccaccgcattgttctattcagaaacaagagcagttacaaagggccacatacccatcta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtccaccgcattgttctattcagaaacaagagcagttacaaagggccacatacccatcta 503
Query: 305 tcaatccgttagattattccaacccaaaatgcagatgtctgccaggttcttatacctcta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaatccgttagattattccaacccaaaatgcagatgtctgccaggttcttatacctcta 563
Query: 365 agaaaggagactgcttctatatggccttctatcataaccacacagatcaaaattagtgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaaaggagactgcttctatatggccttctatcataaccacacagatcaaaattagtgct 623
Query: 425 ctcatgatctagtgttcaaaatgcattcaaatattctctgtaacaccaaccatacacttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcatgatctagtgttcaaaatgcattcaaatattctctgtaacaccaaccatacacttt 683
Query: 485 atagctttgtaaaacacaggtggagcctatggctagccacatgtcttatttttggtgtga 544
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 684 atagctttgtaaaacacaggtggagcctatggctagtcacatgtcttatttttggtgtga 743
Query: 545 ccaggtttttcttactttcttccttgagctgg 576
||||||||||||||||||||||||||||||||
Sbjct: 744 ccaggtttttcttactttcttccttgagctgg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_k05.g1 MSMg01no095_k05.g1 CHROMAT_FILE:
MSMg01no095_k05.g1 PHD_FILE: MSMg01no095_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:43 2005
(503 letters)
>mm_chr6_89168393_89169295
Length = 903
Score = 942 bits (487), Expect = 0.0
Identities = 499/503 (99%)
Strand = Plus / Minus
Query: 1 aggattttctgtctgtctgaccttgacacctgcagatcagacactgtttccccagtgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aggattttctgtctgtctgaccttgacacctgcagatcagacactgtttccccagtgctg 644
Query: 61 ggattaaaagtgggttctttcatcctgccttgctaggcaattttcctttgaagctcaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggattaaaagtgggttctttcatcctgccttgctaggcaattttcctttgaagctcaggc 584
Query: 121 tttttgactgggtttgtggtgggggaagcctaacagctgtcctctagttgctcatgcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttttgactgggtttgtggtgggggaagcctaacagctgtcctctagttgctcatgcttt 524
Query: 181 ggtagtcatagctaaaccacagcccggaagggactgcccatggaccccctgttgttaggt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 523 ggtagtcatagctaaaccacagcccggaaggtactgcccatggaccccctgttgttaggt 464
Query: 241 cctaagtgccccatctcccaaatgacagttctggagacaatgtcataaacagaagaacga 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 cctaagtgccccttctcccaaatgacagttctggagacaatgtcataaacagaagaacga 404
Query: 301 tcaccaggtcaacagaaggactgttactggggaacagaggcctaaagctgggcctctgtt 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 403 tcaccaggtcaacagaaggactgttactggggaatagaggcctaaagctgggcctctgtt 344
Query: 361 tacccggagccttctttaacctgtcccaaagatcaagtaccttggtcaagggcatcattt 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tacccggagcctcctttaacctgtcccaaagatcaagtaccttggtcaagggcatcattt 284
Query: 421 ctggtcaacccaaacagcctgtatcagctcaaagataaccactctgctgggatagaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctggtcaacccaaacagcctgtatcagctcaaagataaccactctgctgggatagaaatt 224
Query: 481 gaaggcttttccaccaaatggcc 503
|||||||||||||||||||||||
Sbjct: 223 gaaggcttttccaccaaatggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
