BAC Information

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BAC

Clone NameMSMg01-095L16
Chromosome6 (Build37)
Map Location 66,293,852 - 66,427,454
singlet/doubletdoublet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095L16.T7 (MSMg01no095_l16.b1)MSMg01-095L16.TJ (MSMg01no095_l16.g1)
ACCAG312574AG312575
length683696
length of high quality
(start - end)
488 (36 - 523)599 (75 - 673)
definitionCHROMAT_FILE: MSMg01no095_l16.b1 PHD_FILE: MSMg01no095_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:50 2005CHROMAT_FILE: MSMg01no095_l16.g1 PHD_FILE: MSMg01no095_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,426,972 - 66,427,454)(66,293,852 - 66,294,450)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCCTT
CCCTGTAAGGGAAGTTTGCTTAAGTTAAATTGATTCTCTTTGATAGGGGA
AAGTAGAAGCTAACTATGTGCTTCCAAAGGCAATGCTATGAAACTTTAAG
CACAAGTGTAAGCTTATTTTAAACAGAAAAATTTAGATGATCACTTTTTA
AAACTTCCCCAAGAGTATGAGTAATCTATTACATATGTATATATCTATAT
ATGATTCAAAATACTCACTCATGTGTATTGTATATGTACATATGTTTAAT
ACCTTGTGTGGCATACCAAAGGGTTAGACACAAAGGGTTAGTGGCCAATG
GATACTTGTTTTAAAATGAATGAAATTTTTTTCAGTAGATATGCTTTTTT
ATTTTTCCATATCTAATAATTATAATAGTTATTAGTAAAGATCATTACAC
TCTCTTAATAAGAAAACCTTTGGTATGTAGATATGATTTTGAAAGCTTTA
AAAATCTCTATTTGCTAAATTGCTCATAGAAAACTATCACTCAGTTTAAC
TGTAGAAATCCATTGAAAACTAAGGTCATTGACTAGAGTAGAATAAATAA
TAAGCATTCAAAGAATTAATAGCTCTAAAGTCATACCTTAATTGTAATTT
GACCACACTTCAACAGAGGCATTTAAATATTTC
GAATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTAGAGTGAAATAAATAAAGTCTT
AGATAAAGGTTTCAGAAGTTTACCAATAGAGCTGATTAATGACCTAGAAG
ATGACACAAACAGTCAGCAGCACCGAGAAAAACCTAGCAAACTGGATGAG
AAAACAACCATATCGATGAACATGCACTCATAATCCAGCTTTGACTTGAA
AGACAAAGTCAACAAGGAAACTAGAATTTCAAATCAGAAACAAGTAATAA
CATTAGAAAATGAAGATTTTAATGAATTAAATTAAAAAGAAACAAAAAAA
ACCATAGGCAACAGAGTAAAGCAATCACACAAAAGAAAATCAGAGATGAA
GGCAACATCAAAGAAAGATGTCATTCATCACACCTATGATCACAGCATCC
AAGAACTCTGGGATACAATCAAAAGGCCAAATATGGGGCTGGGGACATGG
CTCCATGGAGAAAGCACTTGCCATGCAAAACCAGGGGTCAGCTCCCCAGC
ACCTCGGTAAATGCACAGCACATGTGGAGGCCTCTTCTCTGTTCGAGCCC
ACTGGCTAGCAACACTATCTGAACTGGTGAGCTCTGGATTCAGCTAAAAG
ACCATATTTCAGTACATAAAGCAGAAAGGAAGCAAGGGAAACATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_l16.b1 MSMg01no095_l16.b1 CHROMAT_FILE:
MSMg01no095_l16.b1 PHD_FILE: MSMg01no095_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:50 2005
         (488 letters)



>mm_chr6_66426768_66427655
          Length = 888

 Score =  903 bits (467), Expect = 0.0
 Identities = 479/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccttccctgtaagggaagtttgcttaagttaaattgattctctttgatagggg 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 687 gaattctccttccctgtaagggaagtttgcttaagttaaattgattctatttgatagggg 628

                                                                       
Query: 65  aaagtagaagctaactatgtgcttccaaaggcaatgctatgaaactttaagcacaagtgt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aaagtagaagctaaatatgtgcttccaaaggcaatgctatgaaactttaagcacaagtgt 568

                                                                       
Query: 125 aagcttattttaaacagaaaaatttagatgatcactttttaaaacttccccaagagtatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagcttattttaaacagaaaaatttagatgatcactttttaaaacttccccaagagtatg 508

                                                                       
Query: 185 agtaatctattacatatgtatatatctatatatgattcaaaatactcactcatgtgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agtaatctattacatatgtatatatctatatatgattcaaaatactcactcatgtgtatt 448

                                                                       
Query: 245 gtatatgtacatatgtttaataccttgtgtggcataccaaagggttagacacaaagggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtatatgtacatatgtttaataccttgtgtggcataccaaagggttagacacaaagggtt 388

                                                                       
Query: 305 agtggccaatggatacttgttttaaaatgaatgaaatttttttcagtagatatgcttttt 364
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 387 agtagccaatggatacttgttttaaaatgaatgaaatttttttcagtagatatgcttgtt 328

                                                                       
Query: 365 tatttttccatatctaataattataatagttattagtaaagatcattacactctcttaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatttttccatatctaataattataatagttattagtaaagatcattacactctcttaat 268

                                                                       
Query: 425 aagaaaacctttggtatgtagatatgattttgaaagctttaaaaatctctatttgctaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagaaaacctttggtatgtagatatgattttgaaagctttaaaaatctctatttgctaaa 208

              
Query: 485 ttg 487
           |||
Sbjct: 207 ttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_l16.g1 MSMg01no095_l16.g1 CHROMAT_FILE:
MSMg01no095_l16.g1 PHD_FILE: MSMg01no095_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:51 2005
         (599 letters)



>mm_chr6_66293652_66294650
          Length = 999

 Score = 1127 bits (583), Expect = 0.0
 Identities = 595/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtagagtgaaataaataaagtcttagataaaggtttcagaagtttaccaatagagctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aagtagagtgaaataaataaagtcttagataaaggtttcagaagtttacaaatagagctg 260

                                                                       
Query: 61  attaatgacctagaagatgacacaaacagtcagcagcaccgagaaaaacctagcaaactg 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 attaatgacctagaagatgacacaaacagtcagcagcacagagaaaaacctagcaaactg 320

                                                                       
Query: 121 gatgagaaaacaaccatatcgatgaacatgcactcataatccagctttgacttgaaagac 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgagaaaacaaccatatcaatgaacatgcactcataatccagctttgacttgaaagac 380

                                                                       
Query: 181 aaagtcaacaaggaaactagaatttcaaatcagaaacaagtaataacattagaaaatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtcaacaaggaaactagaatttcaaatcagaaacaagtaataacattagaaaatgaa 440

                                                                       
Query: 241 gattttaatgaattaaattaaaaagaaacaaaaaaaaccataggcaacagagtaaagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattttaatgaattaaattaaaaagaaacaaaaaaaaccataggcaacagagtaaagcaa 500

                                                                       
Query: 301 tcacacaaaagaaaatcagagatgaaggcaacatcaaagaaagatgtcattcatcacacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcacacaaaagaaaatcagagatgaaggcaacatcaaagaaagatgtcattcatcacacc 560

                                                                       
Query: 361 tatgatcacagcatccaagaactctgggatacaatcaaaaggccaaatatggggctgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatgatcacagcatccaagaactctgggatacaatcaaaaggccaaatatggggctgggg 620

                                                                       
Query: 421 acatggctccatggagaaagcacttgccatgcaaaaccaggggtcagctccccagcacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatggctccatggagaaagcacttgccatgcaaaaccaggggtcagctccccagcacct 680

                                                                       
Query: 481 cggtaaatgcacagcacatgtggaggcctcttctctgttcgagcccactggctagcaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggtaaatgcacagcacatgtggaggcctcttctctgttcgagcccactggctagcaaca 740

                                                                      
Query: 541 ctatctgaactggtgagctctggattcagctaaaagaccatatttcagtacataaagca 599
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 ctatctgaactggtgagctctggattcagctaaaagtccatatttcagtacataaagca 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)