BAC Information

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BAC

Clone NameMSMg01-095N13
Chromosome6 (Build37)
Map Location 112,007,671 - 112,008,106
singlet/doubletsinglet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397, Thumpd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095N13.T7 (MSMg01no095_n13.b1)MSMg01-095N13.TJ (MSMg01no095_n13.g1)
ACCAG312664AG312665
length707725
length of high quality
(start - end)
445 (29 - 473)41 (75 - 115)
definitionCHROMAT_FILE: MSMg01no095_n13.b1 PHD_FILE: MSMg01no095_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:59 2005CHROMAT_FILE: MSMg01no095_n13.g1 PHD_FILE: MSMg01no095_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCAGATGG
CTCCCATTCTGCTTGCAGCAGGATGGGTTGCATCTTCTGGAATGGGAAGT
GAACTTCTCCCTACACTCACATCCTTCCTTTTCCATGGCTTCAGTGTTGC
CACGAGCACTGTTCAGGCAGAGAGTCCTAGAAGGGAGTGCAGCATTGCTT
GCAATATCTTGATTATTTATTTTAAGTGGGAGAGGAAGAAATCCCCAAAG
GCAAGACACTGAGTGTTATTTTGTGTTTCTGTTTATTGAATGTCCTGATT
AGCGCATCTTTATAAAGTGCCTCTTGAGCTAATTAAATTAACTTTCATTG
AAACTTGCATCTACTTTCACATGCTAGTCAAATGGAAATGCCTTATAGTT
AAGGATGTAAGTTTCACTAAGGAAAAAAAAAACCTCTCTCTTGAATTGGA
ATTATGGGGGATGGAGTTTCTCTGTTGAGGAAACATCCACTATATCTCCA
TAGCCTAATCTTTTTTCCAATTTACTTTATATATGCATGCTTAACTGCAT
TGACCTCTTTGTGCCTGCCCTCACTGATATATCGCCCTTTAATTTTTTAT
TAACCCCCCAAGCCGACCTCTAATCACCTATCTTCCCCCCGCTCCATTCT
GTTTGTTGCGGCCTTTTTTATTGCGCCCCCTATGTCCTAATCCGTGGCTC
CCTCCCT
GAATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAAGAAGTGGGAGTGGGTGG
GTGGGGGAGCATGTGGGTATACCCCCNTTTTAGAAAACACCCAAATAATT
TGATCAAACATAAAATGAAGCAACTCAAAAGAGTTGCATAAGTTCATCAG
ATGCACATACATGCAAGTTATTCCCAGTGACTTTAAAAAATGGTCCTATC
ACAAAATATTTATAGTGAGAAAATACTGTATTAATATCTGTATATTTATT
TTTAGATAGCTGCGCATGTTATAATTCATAAATATTGAGAATCTGAGGCA
TTTACATTATAGCTATTTCTACCTCCCCCCCCAATAACCTATGTATATAT
AAAAATGATCTAAGCACCCCCCAAATTAAGAAAACTTTAAATCTTATAGT
CTACTTCTTACACTGTATCTATGTCTGGTAAGATATTTTATTGATAAAAT
TGACATCCTCAAAAAGAATAGTTTTGGCATTCATCAATAGATGACCTGCT
ACAACATTATTTTCTGTCTGAAAAACCTTGACCCTAATGTTTCGCGCCTT
GTTTCATTACTTAACTCCCACTAACCAAATATACTAATAGCCCACCCCGC
CACACCCATTTTACCCCATGCCACCTATGCCATTCTACTCTGGAAACTTA
ATAACTGTCTCCACAACGTAACCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_n13.b1 MSMg01no095_n13.b1 CHROMAT_FILE:
MSMg01no095_n13.b1 PHD_FILE: MSMg01no095_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:59 2005
         (445 letters)



>mm_chr6_112007462_112008306
          Length = 845

 Score =  797 bits (412), Expect = 0.0
 Identities = 431/438 (98%), Gaps = 4/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  ggaatt-cagatggctc-ccattctgcttgcagcaggatgggttgcatcttctggaatgg 67
           |||||| ||||||||||  ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 645 ggaattccagatggctcagcattctgcttgtagcaggatgggttgcatcttctggaatgg 586

                                                                       
Query: 68  gaagtgaacttctccctacactcacatccttccttttccatggcttcagtgttgccacga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gaagtgaacttctccctacactcacatccttccttttccatggcttcagtgttgccacga 526

                                                                       
Query: 128 gcactgttcaggcagagagtcctagaagggagtgcagcattgcttgcaatatcttgatta 187
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gcactattcaggcagagagtcctagaagggagtgcagcattgcttgcaatatcttgatta 466

                                                                       
Query: 188 tttattttaagtgggagaggaagaaatccccaaaggcaagacactgagtgttattttgtg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tttattttaagtgggagaggaagaaatccccaaaggcaagacactgagtgttattttgtg 406

                                                                       
Query: 248 tttctgtttattgaatgtcctgattagcgcatctttataaagtgcctcttgagctaatta 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttctgtttattgaatgtcctgattagcgcatctttataaagtgcctcttgagctaatta 346

                                                                       
Query: 308 aattaactttcattgaaacttgcatctactttcacatgctagtcaaatggaaatgcctta 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aattaactttcattgaaacttgcatctactttcacatgctagtcaaatggaaatgcctta 286

                                                                       
Query: 368 tagttaaggatgtaagtttcactaaggaaaaaaaaaacctctctcttgaattggaattat 427
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 285 tagttaaggatgtaagtttcactaaggaaaaaaaaa--ctctctcttgaattggaattat 228

                             
Query: 428 gggggatggagtttctct 445
           ||||||||||||||||||
Sbjct: 227 gggggatggagtttctct 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)