BAC Information

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BAC

Clone NameMSMg01-095O16
Chromosome6 (Build37)
Map Location 19,518,190 - 19,518,505
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O16.T7 (MSMg01no095_o16.b1)MSMg01-095O16.TJ (MSMg01no095_o16.g1)
ACCAG312718AG312719
length701695
length of high quality
(start - end)
319 (43 - 361)300 (68 - 367)
definitionCHROMAT_FILE: MSMg01no095_o16.b1 PHD_FILE: MSMg01no095_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:05 2005CHROMAT_FILE: MSMg01no095_o16.g1 PHD_FILE: MSMg01no095_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTTCTATCGGTTTTGGTGCATTGTTTAACCAGTCAAATTGCGTCTTT
TGCAAGCTACCACCTTGGTTTAATAAACTGTTTTACTTGATCCATGTTAG
TATATGGACTGACAGTTTGAGAGAAAAGAAGCATATATGATAAGAGAGTA
TTGAGTGGAACTGCAAAAAAAACTTACATTTAAAAAATTATAATACACAC
TCTTTGGCTTTCATTTGGATCTGAACCACATGTGTTCTTACTACATATAT
AGGTTATATGATTGATTTTCTGTGAAAATTTGAAATCTCATAAGAGTAGA
GCAAAGAAAATAGTTTCTGCTGCTTGAACACCCAAAGAGGAGAAAACTCA
TGTCTCTTTTTCTTTGTCTGTATAAGTTAGCTTTCTATCAATCTTCAAAA
CATGATCTAATCCAAACTTGAAAATCAATGATTATTTTGGGACACAGTTT
CAAATGTTTCATTTCATGCCCCTGTTAATTTGGACCCAAAATAAGTCATA
ATAAGATTGCATGGCAGAGTAAGCTGCCTACTTGATTATCAGTAGGGAAT
GAAGAGAAAAATGAAACTGCATAATCCCTTTAAGGGCATGTCCCCGGTGA
TCCAAAACATCCTACCAGCTTCAATTTGTTAAAGATCTACCTTGTAATAG
A
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCAATTGAGAAATACCAAAGGGCTGAGCACTTG
AAAAAATGTTCAACGCCCTTAATCATCAGGGAAATGCTGATCAAAACAAC
CCTGAAATTCCACCTCACACCAGTCAGAAGGGCTAAGATCAAAAATTGAG
GTGACAGCAGATGCTGGCAAGGATGTGGGGAAAGAGGAACACTCCTCCAT
TGCTGGTAGGATTGCAAGCTTGTACAACCACTCTGGAAATAAGTCTGGCG
GTTCCTCAGAAAATTGTACGCAGTACTACTGAAAGATCCAGTAATTCCTC
TCTTGTTTTTACCCCCCCCACCCTCCAACTGGTAATAAGGACACATGCTC
CACTATGTTTATAGCAAAAAAATAAATAATAGCCGGAAGCTCGAACGAAC
CCAGATATCTCTCAACAGAGGAATGGATACATAAAATGTGGTACATTTAC
ACAACTGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAATCTT
GGGCAAATGGATGTATCTGGAGGATATCATCCTGAGTGAGGTAACCCAAT
CACAAAAGAGAAGTCACTTGATATGCACTCACTGATAAGTGGATATTAGC
CCAGAAACTTAGAATATCCAAGATACATTTTGCAAAACACAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o16.b1 MSMg01no095_o16.b1 CHROMAT_FILE:
MSMg01no095_o16.b1 PHD_FILE: MSMg01no095_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:05 2005
         (319 letters)



>mm_chr6_19517986_19518705
          Length = 720

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%), Gaps = 1/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttctatcggttttggtgcattgtttaaccagtcaaattgcgtcttttgcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 520 gaattcttttctatcggttttggtgcattgtttaaccagtcaaattgagtcttttgcaag 461

                                                                       
Query: 65  ctaccaccttggtttaataaactgttttacttgatccatgttagtatatggactgacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 460 ctaccaccttggtttaataaactgttttacttgatccatgttagtatatggactggcagt 401

                                                                       
Query: 125 ttgagagaaaagaagcatatatgataagagagtattgagtggaactgc-aaaaaaaactt 183
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 400 ttgagagaaaagaagcatatatcataagagagtattgagtggaactgcaaaaaaaaactt 341

                                                                       
Query: 184 acatttaaaaaattataatacacactctttggctttcatttggatctgaaccacatgtgt 243
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acattaaaaaaattataatacacactctttggctttcatttggatctgaaccacatgtgt 281

                                                                       
Query: 244 tcttactacatatataggttatatgattgattttctgtgaaaatttgaaatctcataaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tcttactacatatataggttatatgattgattttctgtgaaaatttgaaatctcataaga 221

                           
Query: 304 gtagagcaaagaaaat 319
           ||||||||||||||||
Sbjct: 220 gtagagcaaagaaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)