BAC Information

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BAC

Clone NameMSMg01-095P06
Chromosome6 (Build37)
Map Location 88,169,245 - 88,169,723
singlet/doubletsinglet
Overlap genenone
Upstream geneAntxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2
Downstream geneDnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095P06.T7 (MSMg01no095_p06.b1)MSMg01-095P06.TJ (MSMg01no095_p06.g1)
ACCAG312745AG312746
length688728
length of high quality
(start - end)
485 (31 - 515)250 (56 - 305)
definitionCHROMAT_FILE: MSMg01no095_p06.b1 PHD_FILE: MSMg01no095_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:08 2005CHROMAT_FILE: MSMg01no095_p06.g1 PHD_FILE: MSMg01no095_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATATCCAGAGATCCGCGGAATTCTGGCGAAA
TTCCATAGCATCGGGGTGATTAGAATCCTTTTAAAAAGCCACTCCATTAA
TTAGAGAGACCGCAGGGGCCTCTGGCTGCCTAATCAGCCTCCATCAGCTT
GCCTGGGGAGGGCTTTCTGGGGCTGCTGTGTGACCTTGGGTGTGCCCTGC
CCTCTCTGGGCCTACTTCTGTACTGAGCTGGGCTCTGCTGACATCACCCA
GTTATCTGAGGTCCTTTCTCTTCCCAGATTCCTTTCTGAGACTCTAGACT
TGAGACATCAGATGTTGAATCCCCAGAGAGGAGGAAGAAGGGGACTCACC
ATCCCACTAGTGAAGGAGGATGGAGATTTACAGAATGGAAGTGACCTCAG
AGTCAGGCCATGCCTGATGAACATGCTCTGCCCCTCAGATGCTATGCTTC
TCCCACTTGGACCCCAAATACTGTTCAGACTTTGGGACCCCAGGATGCTA
ATTGGGACCTCTTTGTAGAAGGGGAAGCCACCTCGGTATGCTGCCACCAA
GTGGCTGTCCAGTTCTAAGATCTGTATCTTCCTTTATGGCCCATCTAGGG
GGCCTCCATTGTCCAACCCAGGAAGCTAGGATTTGCTCTGGATGTGCTTG
ATTCTTCAAGTTTTTGCCGTGCCCTCCGTCCCTGGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAATTCCTTTAAAATAACAATTGTAATCATGCCTCTTTTTTGTTTG
TTTTTCTCTCTTTCTTTTTCTCTTTCTTCAGTTTTTTGAGACAGGGTTTC
TCTGTCTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACC
TCGAACTCAGAAATCCACCCGCCTCTGCCTCCCAAGTGCTGGGATTAAAG
GCGTGCGCCACCACTGCCCAGCATGTTTGTTTGTTTGTTGGTTGGTTGGT
TGGTTGTTTCACACCCATCCCACAACCAACATATACCACTTTTTTTTTTT
TTCCCCCCCCCCCCCCCCTCAATTATCTTTTTTGTTTTTCATACGTTGTA
CCCCCCCACAAAAAAAAAAAAAATAGGGGGGGGCGCGGGCCGGCTTCAGC
ATCTATTCCTGTTCCTGGTTTTTATCGTTATTGTGTTTTTTTTAGTGTCT
ATTTTCCTTATTTTAGTTTATATCCTAAAAATTCACTTATTTGTTTTGTC
ACGATTTAACGTCCCAACATCTTACTCCCCTTTTTTTTCTTTTACTTCTA
CAAACCCCTCTCATCTTCTCTTTCTGCTTCATATTTTGCATTTCCAAATA
TTCACTTTCCTCTGCCACTATTCTTTCTCACCCTTCTTCTGTCTCCCCTC
TCTATAATTTGCATTTCCCTCCCCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_p06.b1 MSMg01no095_p06.b1 CHROMAT_FILE:
MSMg01no095_p06.b1 PHD_FILE: MSMg01no095_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:08 2005
         (485 letters)



>mm_chr6_88169041_88169923
          Length = 883

 Score =  864 bits (447), Expect = 0.0
 Identities = 473/483 (97%), Gaps = 7/483 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctggcga-aattcca--tagcatcggggtgattagaatccttttaaaaagccac 62
           ||||||||||||| ||   ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctggcgataag--cagatagcatcggggtgattagaatccttttaaaaagccac 262

                                                                       
Query: 63  tccattaattagagagaccgcaggggcctctggctgcctaatcagcctccatcagcttgc 122
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccattaattagagagacag-aggggcctctggctgcctaatcagcctccatcagcttgc 321

                                                                       
Query: 123 ctggggagggctttctggggctgctgtgtgaccttgggtgtgccctgccctctctgggcc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctggggagggctttctggggctgctgtgtgaccttgggtgtgccctgccctctctgggcc 381

                                                                       
Query: 183 tacttctgtactgagctgggctctgctgacatcacccagttatctgaggtcctttctctt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tacttctgtactgagctgggctctgctgacatcacccagttatctgaggtcctttctctt 441

                                                                       
Query: 243 cccagattcctttctgagactctagacttgagacatcagatgttgaatccccagagagga 302
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 442 cccagattcctttctgagactctagact-gagacatcagatgttgaatccccagagagga 500

                                                                       
Query: 303 ggaagaaggggactcaccatcccactagtgaaggaggatggagatttacagaatggaagt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagaaggggactcaccatcccactagtgaaggaggatggagatttacagaatggaagt 560

                                                                       
Query: 363 gacctcagagtcaggccatgcctgatgaacatgctctgcccctcagatgctatgcttctc 422
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacctcagagtcagggcatgcctgatgaacatgctctgcccctcagatgctatgcttctc 620

                                                                       
Query: 423 ccacttggaccccaaatactgttcagactttgggaccccaggatgctaattgggacctct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacttggaccccaaatactgttcagactttgggaccccaggatgctaattgggacctct 680

              
Query: 483 ttg 485
           |||
Sbjct: 681 ttg 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space:   414675
Effective search space used:   414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)