BAC Information

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BAC

Clone NameMSMg01-096A22
Chromosome6 (Build37)
Map Location 15,520,632 - 15,520,975
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3a, Foxp2, LOC100040568
Downstream geneMdfic, LOC100041116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096A22.T7 (MSMg01no096_a22.b1)MSMg01-096A22.TJ (MSMg01no096_a22.g1)
ACCAG312824AG312825
length777709
length of high quality
(start - end)
297 (132 - 428)342 (47 - 388)
definitionCHROMAT_FILE: MSMg01no096_a22.b1 PHD_FILE: MSMg01no096_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:16 2005CHROMAT_FILE: MSMg01no096_a22.g1 PHD_FILE: MSMg01no096_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTTTTTTNNTCTTTTCCTCTCTTTCTATCCTTCCCTNCCTCCACAC
AATTCCTNTAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGA
ACACCGCGGAATTCAAGGCCAGTCCCGACAACAGAGTGACTTCAAGGACA
GCCAGGGCTATACAGAGAAACCCTGTCTCAAACATCAAAAAATAAATAAA
TACAAAAAAAGAAAAACCCTCAAAGCACTAAGGTTTAATGTGGTGACACA
GACCTGTAATCCCACCACTTAGGAGTCAGAGACACTCTGATCTCTATGAA
CTCAAGGCCAGCCTGATCTAAATAGGAAATTCCAGGGCAGCTAGGGCTAC
ATATTGAGACGCTGTCTAAAAAAGAACCAAAAGAAGTATAGATTTCATTT
TTGTGGATTTTTATTATTTCTATAGAGAATGCAGAAATGCGAGCATTTGT
GACACTGTGCTATATATTACCTATTTTTTGGCTAGGTAGTATTTATTATG
TATTAGGGCTATGATACGACTATGTCATGCTTATACCATAAATCATTTTA
CACTAAGGCGCCTTTAAGCCATTTTAATTTTTTGTCAGCTATTAACGACG
CTGCTTCAAATGCCTAGAATAACAGTTGAAGCCCATGTGAGGAGGTATGA
TATTTTCTACGTGAGTTTCTTTTACAAGGAGGAGCAAGCCAAATAACTGC
ACACATGTAATACTGCGCGTTATGCTTACTGTAACCTTCCTCCTGCTTCC
ACGACCAACGTGTAATGTCTACACTTC
CCTGGCTTCGTCACAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCT
CTAGAAAGTAGGAAGGAGACAGACTCGTAAGCAGAAAATAGGTGATAGAT
CTCACAACAGGTGTGTATATCATCACTGAGGCAGAAGTTGGAATGATTAA
CTGTCCAGGGAAATCTTTATGATACTGCAATGGAGGGACCAGAAGAACAG
AGGGAAGTTACAGACAGGGAAAGAAGGAGACATTTAGGTAATATTTATCC
TGTTTGCAATAGGAAAGGGGGCTAATATACAATTTGTGACAAGATGTGAT
TTACAGAGTTTCCAAGTGGAGTAGAACTAGGTTGTTTTTTTAGAAGGATG
ACTGGAAAATTATCCTACTTTAAGGCACAGAAATTGAAAAGACTTGTTGT
GATATGAGAATATAAACTGGTCCAGCCATTATGGAAGCAGGCATGAAACT
TCTACATTTGTTTCCACCTTGAGAACAGATTAAATACGATGAGGTTTCCT
CATAACCTAAAAATATGCGCAATCTATCATATAACTCAACTCTAACTTAA
CATGTTCCCAGAGATACTTATCCATAATATCACTTTTAATAGTAACTAAA
TCATATAACCAACCTAAATATCCTTCACCCGAAGAATGGTTGAGGACAAC
ATGGATATAACGCATAATAGCATTAATATTCTTGCCCTTACATTACGTGA
GCCCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_a22.g1 MSMg01no096_a22.g1 CHROMAT_FILE:
MSMg01no096_a22.g1 PHD_FILE: MSMg01no096_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:16 2005
         (342 letters)



>mm_chr6_15520432_15521175
          Length = 744

 Score =  592 bits (306), Expect = e-173
 Identities = 334/344 (97%), Gaps = 2/344 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctagaaagtaggaaggagacagactcgtaagcagaaaataggtgatagatctcaca 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttctctagaaagtaggaaggagacagactcgtaggcagaaaataggtgatagatctcaca 260

                                                                       
Query: 61  acaggtgtgtatatcatcactgaggcagaagttggaatgattaactgtccagggaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 acaggtgtgtatatcatcactgaggcagaagttggaatgattaactgtccagggaaacct 320

                                                                       
Query: 121 ttatgatactgcaatggagggaccagaagaacagagggaagttacagacagggaaagaag 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttatgatactgcaatggagggaccagaagaacacagggaagttacagacagggaaagaag 380

                                                                       
Query: 181 gagacatttaggtaatatttatcctgtttgcaataggaaagggggctaatatacaatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagacatttaggtaatatttatcctgtttgcaataggaaagggggctaatatacaatttg 440

                                                                       
Query: 241 tgacaagatgtgatttacagagtttccaagtggagtagaactaggttgtttttttagaag 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 441 tgacaagatgtgacatacagagtttccaagtggagtagaactaggttgtttctctagaag 500

                                                       
Query: 301 gatgact--ggaaaattatcctactttaaggcacagaaattgaa 342
           |||||||  |||||||||||||||||||||| ||||||||||||
Sbjct: 501 gatgactctggaaaattatcctactttaagggacagaaattgaa 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 744
Length adjustment: 9
Effective length of query: 333
Effective length of database: 735
Effective search space:   244755
Effective search space used:   244755
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)