BAC Information

Click to search

BAC

Clone NameMSMg01-096A23
Chromosome6 (Build37)
Map Location 54,477,227 - 54,477,375
singlet/doubletsinglet
Overlap geneScrn1
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3
Downstream geneFkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096A23.T7 (MSMg01no096_a23.b1)MSMg01-096A23.TJ (MSMg01no096_a23.g1)
ACCAG312826AG312827
length790803
length of high quality
(start - end)
149 (176 - 324)41 (266 - 306)
definitionCHROMAT_FILE: MSMg01no096_a23.b1 PHD_FILE: MSMg01no096_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:17 2005CHROMAT_FILE: MSMg01no096_a23.g1 PHD_FILE: MSMg01no096_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCTTTTTTTTCTTTCTTNATATATTCCCTCCTCTCCCCCCTATATTN
NCCATTATAATTGCGGCGCTAATAGAAAACTATATTTCTTACTCGCCGGN
ATTNAAGGCTCATGTCTTAAAAAATTAGTCTTTAAAGGATTAATGTTGTA
GATTATGGTTCTGTAATCAAGTCTTCCTAAGTAAGCTTAAAAGGAGCCCT
GTCGAGCGAATTGGTGTACGATGCTCTGACCATGAACATAAGCCAATTAC
AGGGCTCAGTCTACAGCTTGCAGTTGCATTATCCTTTCTTCCTCATGACA
GCACATTGGGACATGCCTTAAGACACATTCAATGGCGGAGATTTTAAATA
GTCATTACTTCTCAAGTCATGTTTTTTTTAATGACAGGTTACCACTCTAC
CTGAGTAGCTCTGTTTCCTGTCCCACCACCCGAGTGTCTATGAACATAAT
AGTAGTTCACCTGAATAAACGCACGACATGCATCTCATGGGCTGCTTTCT
GTCTCCTTAGTTTGGAAAGGATTCTATAGTTGTGTGCTCTTTGCCAGTAT
GAGGACACCCACCTATAAAGGTCAATTGACTAATGTCACTTTGCCTTCCA
GTAGTTTAACCATACGTTGTTAGTCGAGGTCCTTTGTTCTTCAGAAGATT
TGGACCAAGTTATTCCATTTGCTGGAATGTAATTGTTTACCATTATGGTT
TCCTCCATATAAGGGCTGAGCGGTATTCCGGCTTAACTACCTTATTTAAA
CCCTGGTGTTCTCGCCCCTTCTTTTTACACGGTCCACTAC
CTCCCTTTTTTTTCTTTCCTTCTCTCTTTCCTACTCCTTTTCCCTCTTAC
CCCCCCCTTCGATGATATGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCCCAAATTCTTTTGCTATTGTTTTTGTT
TTGTTTTGTTTTTGTTTTTTGTTTTTGCAACATAGGACAGACTTCTCTGT
GTATCCCTGATTGTCCTGGAACTCACTCTGTACACCAGGCTGGCCTCTGG
AAAGGGCCGGAGAGAAAATGCAGTTCAGGCTTGGCCTCTTTGCTACATGA
TAGGGCCTGTATCCCAACTAGTACATCCTGAGAGGGTAAGCTAAGGCATT
TGTGATCACTAGTATGCTGAGAACAGACTCTCTTTTAGATTCTTTCCAGG
GTCAGGGTGCTACGAATGCCTATTTGTATAACGCCGAATTCTAGGTGCTG
TTGGATCTGATCTAGTTTACCAGCTACATGATCTATTGATGAAAATAACT
GTCGTAGAACAGGGCTTATATGGTCCTTCTACGACCATCTCTGGTGCTAA
CCTCCTAGTTGTTTTTCTCCCCTTCCCTATCTCCCTTCCCTCTTCTTCCC
TATCCTCCTTCCTATCTATTCCCGAGTTCACTTCTCCTTTCTCCTTTTCT
TTCCTCCCCTTCACCCGTTTGTTCCCCTCCTCCATTTCCTCCTTTTCCCT
TTTCTCCTCCTTCTTTTCCTTCTACCCTCCCCCTTACTTATCTTCCCCCT
TATTTTTCCTTTTCTTCTTCCCCCCCTCTTCCCTTTTCCCCCACTCCCTC
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_a23.b1 MSMg01no096_a23.b1 CHROMAT_FILE:
MSMg01no096_a23.b1 PHD_FILE: MSMg01no096_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:17 2005
         (149 letters)



>mm_chr6_54477027_54477575
          Length = 549

 Score =  273 bits (141), Expect = 4e-78
 Identities = 147/149 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaagtaagcttaaaaggagccctgtcgagcgaattggtgtacgatgctctgaccatga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 349 cctaagtaagcttaaaaggagccctgtcgagtgaattggtgtacgatgctctgaccatga 290

                                                                       
Query: 61  acataagccaattacagggctcagtctacagcttgcagttgcattatcctttcttcctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acataagccaattacagggctcagtctacagcttgcagttgcattatcctttcttcctca 230

                                        
Query: 121 tgacagcacattgggacatgccttaagac 149
           |||||||||| ||||||||||||||||||
Sbjct: 229 tgacagcacagtgggacatgccttaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)