BAC Information

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BAC

Clone NameMSMg01-096B09
Chromosome6 (Build37)
Map Location 59,489,029 - 59,489,426
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
Downstream geneEG634166, EG627108, EG434019, LOC671300, EG627178, LOC100041706, LOC100041717, A530053G22Rik, LOC667066, LOC100041726
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096B09.T7 (MSMg01no096_b09.b1)MSMg01-096B09.TJ (MSMg01no096_b09.g1)
ACCAG312846AG312847
length785714
length of high quality
(start - end)
348 (132 - 479)484 (55 - 538)
definitionCHROMAT_FILE: MSMg01no096_b09.b1 PHD_FILE: MSMg01no096_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:19 2005CHROMAT_FILE: MSMg01no096_b09.g1 PHD_FILE: MSMg01no096_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTTTTTNNTTTTNNNNNNNTCCNTCTCCCCCCCCCCCCCCCCCTCT
TCACCNNNTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGTATTGTTTTGCCATACTCTTGATCTCCATCTAT
AGTAATTGAGAGTTTAGTTGGGTATAGTAGCCTAAGGTGGCATTTGTGTT
CTCTTAGTGTCTGTATAACATCTGTACAAGATCACCTGGTTTTCATAGTC
TCTGGATGAAGTCTGGTGTAATTCAAATAGGTCTGCTTTTATATGTTACT
TATCTTTTCCCTTACTGCTTTTAATACTCTGTCTTTATTTAGTCTTTTTG
TTGTCCTGATTATTATGTGTTGGGAGGAATTTCTTTTCTGGTCCAGTCTA
CTTGGAGGTCTGTTGGTTCTCCTATCCCCATCCAGAGATCCATCCCATAA
ACAACCACCAAAGCCAGACACTATTGTATAACCAAGCCAGATTTTGCTGA
AAGGGTCCTGATATTGTTGTCTCTTTTGAGGCTATTCTAGTATCTGGATT
ATACTGAACTGGATGCTCATAGCCTTCTATTGTATTGAACCACCGTGATT
TTAGCTAGACAATGTACCTATGGAGCTTAATGTAGCCTGTATACCTATAT
GAGGATCTTCTCTATGTTTTACTCTGCATCCCCCCTCATCTTGTCCTCTC
TAGTTGCACATGTAATCACATTCTTGCCTTGTACGCCTTTCTTTGGTCAT
AATATGACCCTTGGTCTTTGCCATTATTGACATGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATTTGCAAAGCTTTGGATTTGAATCTCTGTCTAGAAAAACAAACC
AAGAATGTCATTAAGGTTGGGGAGATGACTCAGGGATAGGGTAAGAGCAC
TGACTACTCTTCCAAATTATAGGGATTCAAATCCCAGCACCCACATGGAA
GTTCACAACTGTCTGTAATTTCAGTCCCAAGGGATTTGAAACCAGCCCAC
AAACATACATGGCGGCTGAATGCCAATGTATATAAAGAAAATAAAAATTT
AAAAAAAGTAAACCTCAGTTTAAAAAAAATCTAGAAACATCAAGAGTTAT
CTCTTTGATTAAGACCAAGGGCTATCTCCACAGAGTCATATTTCAGGTTG
TCACCTTGGGAAGGATGGAGTTTAGTCAAAGTACTTCATATTTATAGTTA
AATACTGTCAAGTTGCAAAAGGAAAAAAAACTATAAAATTCACCCAGCTG
TTCAGCACTTTGAAATTTTACTGTAATTCCAGTTAAGAAATTCTCAATTT
TAATTCCTCCTAATGAAATCACTAAAGACAGTACCTAATTGTATAATCGC
TTTAACGGTTTCTCAGTTAAAGAACTATACTAAAGATCCTTCATCGTATG
TCTTTCCAAAAAGCCCATGATGAATAGCTAAATAAGGAACTCCCTACAGT
TTAAATGTCACGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_b09.g1 MSMg01no096_b09.g1 CHROMAT_FILE:
MSMg01no096_b09.g1 PHD_FILE: MSMg01no096_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:19 2005
         (484 letters)



>mm_chr6_59488546_59489426
          Length = 881

 Score =  325 bits (168), Expect = 4e-93
 Identities = 350/422 (82%), Gaps = 35/422 (8%)
 Strand = Plus / Minus

                                                                       
Query: 71  atgactcag--ggatagggtaagagcactg-actactcttccaaattatagggattcaaa 127
           |||||||||  |  ||| |||||||||| | ||| |||||||||| || |||||||||||
Sbjct: 881 atgactcagcag--tagagtaagagcac-gaactgctcttccaaactacagggattcaaa 825

                                                                       
Query: 128 tcccagcacccacatggaagttcacaactgtctgtaatttcagtcccaagggatttgaaa 187
           ||||||||||||||| | ||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 824 tcccagcacccacat-gcagttcacaactgtatataattccagtcccaagggatttgaaa 766

                                                                       
Query: 188 ccagcccacaaacatacatggcggctgaatgccaatgtatat-aaagaaaataaa-aatt 245
           ||  ||||||||||||||||| ||| |||| |||||||| || |||| | | ||| ||  
Sbjct: 765 ccctcccacaaacatacatggaggcagaataccaatgtaaataaaag-agagaaagaa-- 709

                                                                       
Query: 246 taaaaaaagtaaacctcagtttaaa-----aaaaatctagaaacatcaagagttatctct 300
           ||||||   ||   ||||| |||||     |||||   ||   |||||| |||| |||||
Sbjct: 708 taaaaa---ta---ctcag-ttaaatttttaaaaa---ag---catcaaaagttgtctct 662

                                                                       
Query: 301 ttgattaagaccaagggctatctccacaga-gtcatatttcaggttgtcaccttgggaag 359
           ||||||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||
Sbjct: 661 ttgattaagaccaagggctatctccac-gaagtcatatttcatgttgttaccttgggaag 603

                                                                       
Query: 360 gatggagtttagtcaaagtacttcatatttatagttaaatactgtcaagttgcaaaagga 419
           | || | ||||| ||  || |||||||||||||||||||||||||||||||||| |||||
Sbjct: 602 ggtgaactttagacactgttcttcatatttatagttaaatactgtcaagttgcagaagga 543

                                                                       
Query: 420 aaaaaaactataaaattcacccagctgttcagcactttgaaattttactgtaattccagt 479
           ||||   |||||||||||||  |||||| ||||||||  ||||| || | || |||||||
Sbjct: 542 aaaa---ctataaaattcacagagctgtacagcacttcaaaattatattttatttccagt 486

             
Query: 480 ta 481
           ||
Sbjct: 485 ta 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 881
Length adjustment: 10
Effective length of query: 474
Effective length of database: 871
Effective search space:   412854
Effective search space used:   412854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)