BAC Information

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BAC

Clone NameMSMg01-096F10
Chromosome6 (Build37)
Map Location 58,553,709 - 58,554,197
singlet/doubletsinglet
Overlap geneAbcg2
Upstream geneHerc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954
Downstream geneHerc3, Nap1l5, D430015B01Rik, Tigd2, Gprin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096F10.T7 (MSMg01no096_f10.b1)MSMg01-096F10.TJ (MSMg01no096_f10.g1)
ACCAG313039AG313040
length721731
length of high quality
(start - end)
469 (69 - 537)476 (74 - 549)
definitionCHROMAT_FILE: MSMg01no096_f10.b1 PHD_FILE: MSMg01no096_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005CHROMAT_FILE: MSMg01no096_f10.g1 PHD_FILE: MSMg01no096_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:39 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAAGCTGATGTTCAGTGAGGACTGTTAGATGGTCCAATTTGGAATGTT
AATAGTTTGTGTTACTTTCCCCTCTAGGAATAAGCAATATCAGAATGTGA
ATGTCCTAATGCTTTTAGGAAAACTTGTTTGTGTAAAGATGTTTCATGCT
TTAATCACCAGAGGGTGCCAGAGTCAAGCAAATGATTTTTCTTCTCTTCA
TATGTGTATACAATATAGGTTGAGTATATACATACTCTACTGGGCCCCCC
TCCAGCCCCTTGAGAACTCACCCCCAGCACATTTTCCCCTCAACTTCATG
AAATAAACACACACATACACACGAGCGCACAAACACACACTTCTGAAACA
AATATCCAATAAGTGCTGCTTGTATGTATTTGGGTACTTTTAGTTTTCAT
CTGTAGCTGAGATAATCTTCAAGTAGTGGAAGGAGGCACTATTTATATTG
GAGAGGGGAAGTGTGTAAGTGAGAATTTGCCACATAAACTAGGACATGTG
TTCTTCTCTCCATACAAATCTCCAACTTCTTATATTTTTGTTTGCGAACC
TAGACTTTAGTGGCTCGGCCATCTCCTTCGTCTCAAAAGCTCTAATTCCT
ATAATTAATATGACAACCGGAGAAAGTGGACAAACTGCTCTTCACCTTGA
TGCCGGGGAAATCCTTCTCTC
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGAAGGCAGAAACAAACTTAATGAA
AGACCAGAGAACTCCTACAAGTGGGTAAGAAAATAATTTACATATGCAGG
TTGTGAACATTATATCCAGAGATATAAAAGTCTAAGGAATGGTCACTCTG
AAATGAAACAAGAAATGAACTCTGTAAGCCTGGTGGTAATTCATTGGCCA
ATATATGAAGATATAGATTTCAGACAAAAAAAAAAAAAGAAAAAGAAAGA
AAAAAAAAGAAAAGAAAAGAGAATATTAGAGAAGAGAAGAGAAGAAAAGA
AAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAATCAG
CCTGTCAATGACAGAGGTCTTCCATCCTAGCTGTCAGGGGGCTCAGGCAG
GCAGATTGATGTGATCTAAAAGCCATTCTGGTTTCTATATCAGGACACAT
GAAAATCAGGACTAGAGTGTGGGACCAAGTTTTATAAACAAACAAACACA
CAAACAGGAAACCCATACAAGAAATTGGAGCTTTGTTTTCTACATTGATA
TCAAAATCAGTTTAAAAATTACAAGGATATTAGAAGACTGATTATATAGG
TATGAATGAATAAATCTCCTATTGGATAATACTTTTAAAGTTGGATCCTC
AGTGGATCACAATGCTTTGAGGAATTTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_f10.b1 MSMg01no096_f10.b1 CHROMAT_FILE:
MSMg01no096_f10.b1 PHD_FILE: MSMg01no096_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:39 2005
         (469 letters)



>mm_chr6_58553531_58554397
          Length = 867

 Score =  717 bits (371), Expect = 0.0
 Identities = 451/491 (91%), Gaps = 24/491 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggactgttagatggtccaatttggaatgttaatagtttgtgttactttcccctctagg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 179 gaggactgttagatggtccaatttggaatgttaatagttcgtgttactttctcctctagg 238

                                                                       
Query: 61  aataagcaatatcagaatgtgaatgtcctaatgcttttaggaaaacttgtttgtgtaaag 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aataagcaacatcagaatgtgaatgtcctaatgcttttaggaaaacttgtttgtgtaaag 298

                                                                       
Query: 121 atgtttcatgctttaatcaccagagggtgccagagtcaagcaaatgatttttcttctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 299 atgtttcatgctttaatcaccagagggtgccagagtcaagcaaatgattcttcttctctt 358

                                                                       
Query: 181 catatgtgtatacaatataggttgagtatatacatactctactgggcccccctccagccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 359 catatgtgtatacaatataggttgagtatatacatactctactgggcccccctccagacc 418

                                                                       
Query: 241 cttgagaactcacccccagcacattttcccctcaacttcatgaaataaacacacacatac 300
           |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||
Sbjct: 419 cttgagaactcacccccagcacattttcccctcagcttcatgtcataaacacacacacac 478

                                                                       
Query: 301 acacgagcgcaca-a---------------------acacacacttctgaaacaaatatc 338
           |||| | | |||| |                     |||||||| |||||||||||||||
Sbjct: 479 acac-a-cacacacacacacacacacacacacacacacacacacgtctgaaacaaatatc 536

                                                                       
Query: 339 caataagtgctgcttgtatgtatttgggtacttttagttttcatctgtagctgagataat 398
           || | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 537 cagttagtgctgcttgtatgtacttaggtacttttagttttcatctgtagctgagataat 596

                                                                       
Query: 399 cttcaagtagtggaaggaggcactatttatattggagaggggaagtgtgtaagtgagaat 458
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 597 cttcaagtagtggaaggaggcactatttatattggagaggggaaatgtgtaagtgagaat 656

                      
Query: 459 ttgccacataa 469
           |||||||||||
Sbjct: 657 ttgccacataa 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 867
Length adjustment: 10
Effective length of query: 459
Effective length of database: 857
Effective search space:   393363
Effective search space used:   393363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)