BAC Information

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BAC

Clone NameMSMg01-096K06
Chromosome6 (Build37)
Map Location 76,471,468 - 76,471,908
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096K06.T7 (MSMg01no096_k06.b1)MSMg01-096K06.TJ (MSMg01no096_k06.g1)
ACCAG313270AG313271
length713726
length of high quality
(start - end)
440 (68 - 507)506 (68 - 573)
definitionCHROMAT_FILE: MSMg01no096_k06.b1 PHD_FILE: MSMg01no096_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:04 2005CHROMAT_FILE: MSMg01no096_k06.g1 PHD_FILE: MSMg01no096_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTAAACGACTCCTATAGTTCGAAAATCCGCGGAATTCT
CCAGAGTGTTTCGATACATTCTTCTTTCCTGTATCTTGTCTCCTCATCCT
CTTTCTGACATGTAGTGAGAATGAGCGTGTGTAGCTCACGTTGTCAGAAT
GCCCTACCTCACACCAGCTCCAAATCAACAAAGCTAAGGACTAAAAATCT
TCCCAATAAAACACTGAAGTAAACAATTTCAACTGATTTTAAGTTGTATT
AAATATTTTATCTCAGTGATCAAAGTGTGACTAGTTTATTCTCCTACTTG
TGTGGGTCTCCCCCAATTAATTGAACATCAACAACAAAAAAAAAAGCTTA
ATAAGAGAGAATTCTTCCTTCACATAGAATGTTTTCAGGTGGGAATATTT
AGTCTATCTCGCTTCGCCACTTGTTGATAAGTTGCACTGAGTCTTCAGAG
TGCAAATTTGTTATGAATTTTTAGTGTCTGTAGATATGTGAGTCAATCTC
TCATAGTAACTGTCTTTCTCCTTCTTCCACTTTTATTCTCTCCCACATAC
CTTTGTCCTTCTATGCAACTTTCTCTCTAATTCTCTGTTAACTCTCTTGA
TAACTAATAATCAAACCATCATCAATAATCATGACTATCCCAAATGTTCT
ATTTTATATCAAAGTATTGTTATGATGGGTCTCAATTATTCCAGATATCT
GGCATCCTCTTCG
ATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCTGAGCCCACATATTATTGTTATAAAGGAG
GGGTACTGACTTTTTTTAGTTAATTTTGTGTGCAGCCACTTTGTTGCAGG
TATTTACAAACACTCTGGAAATCAATCTTCCAGTTTCTCAGAAAATTTGG
CATAGTTCTCCAACAAGACCCAAAAGATTCTCTACCATACTACAAGGACA
CTTGATCAACTATATTCATAGCAGCTTTATTCATAATAGTCAGAAACTGG
AAACTACCCTGATGCACCTCAACTAAAGAATGGATAAAGCAAATGTAGTT
CATTTATACAATGGAATACTACTCAGCTATTAAAATGGGGACATCATGAA
AACTGCAGGCAAATGGGCGGAACTAGAAGTCTTCATCTGAAGTGAGGTGA
GGTAACCCAGATACAAAAGGACATGTATGATTTGTACTCACTTATAAGCA
GTTATTAGCCATAAAGTACTGGATGTGTATGCTATATTCCATAGACCCAG
AGAAGCTAAATAAGGAGGGCACAAGGCAGGATGATTGAATTTCACTCACA
AGAGGATACAAAATAGGATGGTGGTAACGAGGTAGAAAATTGGTGGGAAA
GGGGCATGGGAAGAATCTTTTGTAAATATATCTATGCAGAGAAAACCCAT
CTATTGGAGAGGGACTTGCTTCTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_k06.b1 MSMg01no096_k06.b1 CHROMAT_FILE:
MSMg01no096_k06.b1 PHD_FILE: MSMg01no096_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:04 2005
         (440 letters)



>mm_chr6_76471268_76472108
          Length = 841

 Score =  783 bits (405), Expect = 0.0
 Identities = 432/441 (97%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttctttcctgtatcttgtctcctcatcctctttctgac-atgtagtgagaatgagc 59
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 641 attcttctttcctgtatcttgtctcctcatcctctttctgacaatgtagtgagaatgagc 582

                                                                       
Query: 60  gtgtgtagctcacgttgtcagaatgccctacctcacaccagctccaaatcaacaaagcta 119
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gtgtgtagctcatgttgtcaggatgccctacctcacaccagctccaaatcaacaaagcta 522

                                                                       
Query: 120 aggactaaaaatcttcccaataaaacactgaagtaaacaatttcaactgattttaagttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggactaaaaatcttcccaataaaacactgaagtaaacaatttcaactgattttaagttg 462

                                                                       
Query: 180 tattaaatattttatctcagtgatcaaagtgtgactagtttattctcctacttgtgtggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tattaaatattttatctcagtgatcaaagtgtgactagtttattctcctacttgtgtggg 402

                                                                       
Query: 240 tctcccccaattaattgaacatcaacaacaaaaaaaaaagcttaataagagagaattctt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctcccccaattaattgaacatcaacaacaaaaaaaaaagcttaataagagagaattctt 342

                                                                       
Query: 300 ccttcacatagaatgttttcaggtgggaatatttagtctatctcgcttcgccacttgttg 359
           ||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||
Sbjct: 341 ccttcacatagaatgttttcaggtgggaatatttagtctatcttgctttggtacttgttg 282

                                                                       
Query: 360 ataagttgcactgagtcttcagagtgcaaatttgttatgaatttttagtgtctgtagata 419
           |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 281 ataagttgtactgagtcttcagagtgcagatttgttatgaatttttagtgtctgtagata 222

                                
Query: 420 tgtgagtcaatctctcatagt 440
           |||||||||||||||||||||
Sbjct: 221 tgtgagtcaatctctcatagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space:   358592
Effective search space used:   358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)