BAC Information

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BAC

Clone NameMSMg01-096K20
Chromosome6 (Build37)
Map Location 119,828,296 - 119,828,450
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1
Downstream geneLOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096K20.T7 (MSMg01no096_k20.b1)MSMg01-096K20.TJ (MSMg01no096_k20.g1)
ACCAG313298AG313299
length683687
length of high quality
(start - end)
410 (47 - 456)573 (54 - 626)
definitionCHROMAT_FILE: MSMg01no096_k20.b1 PHD_FILE: MSMg01no096_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:07 2005CHROMAT_FILE: MSMg01no096_k20.g1 PHD_FILE: MSMg01no096_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATTCAGAGGATCCGCGGAATTCTGTTTAGCTCTCGTACCCCAT
TTCCAATAGGGCTGGTTTGGTTGCTGGTATCTAAATTCTTGAGTTCTTTA
TAGAGTTTGGATAGTCGCCGTCTGTCAGATGTAGGGGTGAATGATGTGGA
TGTAGATGTCCTTTCCTAATCTGCAGGCTGCCATTTTGTCTTAATGACTT
TGACTCACAGAAGCTTTTCAGTTTCATGGGGTCCCATTTATTAATTGTTG
ATCTTAGTTTCTGAGCCATTGGTGTTCTGTTCAGGAAGCTGTCTTCTGTA
CCAATGTGTTCAAGGCAGTTCCTCACTTTCAGTTTTATTATATTTAGTGT
ATCTGGTTTGTCATTGAAATCTTCGATCCACTTGGACTTGAGTTTTATGC
GGGGATCTATTTGCATTCTTCTACATGCAGACATGCAGTTAGAGCAGCAC
CATTTGTTGCAGATGTTCTCCCTTTCCCATTGTGAGGTTTTGGCTTCTTT
GTCAAACTATGTTCATATCGGCTTTATTCCTAATAGTCAGAACTGGAAAC
ACCCTAGATTTCCCTCAACTGAAAAATGGATAATGAAAACATGGTTCACA
TTACCTATGGAATACCTGGCCATTACGAACTATGACCTCATGTATTATGT
ATCTACGACCCCTCCCATAAGGACATGCCCTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATGAAAAAGTGACACAGCATACCCAAACTTATGGGACACAATGAAAG
CAGTGCTAAGAGGAAAATTCATAGCAGTCAGTGCCCTTGTAAAGAAATTG
GAGAGCTCCTACACTAGCAGCTTAACAGCACACCTGAGAACCCTAGAACA
GAAAGAAGCAAAGGCACCCAAGAGGAGTAGATGGCAAGAAATAATCAAAC
TCAGGCTGAAGTCAACCAAATAGAAACAAAAAGAACAATACAAAGAATCA
ACAAAACCAAATGTTGGTTCTTTGAAAGAATCAACAAGATAGATAAACCC
CTGGCCAAACTAACTAAAGCAGACAGAGAACTTATCCAAATTAACAAAAT
CAGAAATGAGAATGGCGACATAACCACAGAAACGGGGGGAATTAAAAAAA
TCATCAGGCCGGGTGTGGTGGCACATGCCTAACTCACTCTACAAAGCCAC
TCCCCACTCCTTGGTGAGCTGTTTTCTTGCTATTCAGCTGCCCATGCTCT
CTACATACCGAGTCTTATCCCCTCACTCGATGTATGGCTCCACTTTGTGA
CTTTTCTCTTTATTCTGTTTTTTCTTTTATTGTAATTTTTCATTTCTAAT
TTGTTGATTGCCGCCGCTGATGCTGCTGCTGCTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_k20.g1 MSMg01no096_k20.g1 CHROMAT_FILE:
MSMg01no096_k20.g1 PHD_FILE: MSMg01no096_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:07 2005
         (573 letters)



>mm_chr6_119827679_119828650
          Length = 972

 Score =  279 bits (144), Expect = 5e-79
 Identities = 153/156 (98%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                       
Query: 418 gcacatgcctaactcactctacaaagccactccccactccttggtgagctgttttcttgc 477
           |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 772 gcac-tgcctaactcactctacgaagccactccccactccttggtgagctgttttcttgc 714

                                                                       
Query: 478 tattcagctgcccatgctctctacataccgagtcttatcccctcactcgatgtatggctc 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 tattcagctgcccatgctctctacataccgagtcttatcccctcactcgatgtatggctc 654

                                               
Query: 538 cactttgtgacttttctctttattctgttttttctt 573
           |||||||||||||| |||||||||||||||||||||
Sbjct: 653 cactttgtgactttcctctttattctgttttttctt 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space:   541606
Effective search space used:   541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)