BAC Information

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BAC

Clone NameMSMg01-096O05
Chromosome6 (Build37)
Map Location 85,076,875 - 85,077,172
singlet/doubletsinglet
Overlap genenone
Upstream geneDysf, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016
Downstream geneSpr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096O05.T7 (MSMg01no096_o05.b1)MSMg01-096O05.TJ (MSMg01no096_o05.g1)
ACCAG313457AG313458
length714744
length of high quality
(start - end)
249 (68 - 316)301 (69 - 369)
definitionCHROMAT_FILE: MSMg01no096_o05.b1 PHD_FILE: MSMg01no096_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:25 2005CHROMAT_FILE: MSMg01no096_o05.g1 PHD_FILE: MSMg01no096_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACTGGGCGGAATCTC
TGTTTATTCCGAAAACATTTGTTAATAGGGTTATTTGGCTCTCTGGAGCC
TAACTTCTTGAGTTCTCTCTATATATTGGATATTAGCCCTTTATCGGATG
TACAATTGGTGAAAATCTTTCCCCAATCTGTTGGTTACCATTTTGTCCTA
TTGACAGTGTCCTTTGCTTTACAGAAGCTTTACAGTTTTATAAGGTCCCT
TTTGTCAATTCTTGATCTTAAAGCATAAGTCATTGGCGTTCTGTTCAGGA
ACTTTTCCCCTGTGATTTTGTGTTCGAGGCTTTTCCCCACTTCCTCTTCT
ATTAGATCAGTGCGCCCGCCCTCAATGTTGAGGACCTTGATTCACTTGTA
CTTGATCATCCCCCACTGAGTGTACAATGCACCAATATGCATTCTTCTAT
ATGTTGAACCAGCACCATTTGCTGAAAATGTTACCTTTTTCCCCTGAATG
CCTTTATCTCCTTTGTCAAAAATCCCGCGACCATACCTGTGTGGACTCAC
TCTTGGCTCTTTCAATCTAATTTCCTTGTACTACTTGCCTGTCACTGTAT
TATCTTCATTTACCTTTTATCTCTCTTGCTCTTGTTGACTGTTGGCAAGT
CCGTATTGTGAATTTCCGCTCAATCCTAATCATTCTTATTCAAATCTCTT
TCCTTCCTTTTTGC
TCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCTGTCTCCTCCCCGTCATGGGCGAACAAGG
ACTTACTGGGTCAGGACCCCCTAACTCAGAGCCCTCTTAGCCCCAGCACC
CTGGAAGGTTGGGGTAGAAAATTTGCAGAGCATAAGTTCTACTGTCAACA
GCCCTTTTCCCCCCTTAATGCCTACAAAAGAAACCTGAGCAGATTGGGGA
AATGCCCTACAGTTCTAGGTAGCAGGAGGGTCGACCTGTTTGTTCCCAGG
TCGCATGTCCAAGAGGCCAGGTTGTCTCTGCCAGCCATGGACCACTGGCC
TGTCCTCTCAAGAGCCACGCGTACAGCAAGGACAGCTCCAATTTAGGGAA
TAGTGACCCTAAGACCCTATTTTGCTCTTGTCATCGACTATTGCACCGCG
AGGAGAGGGGACCTGGCAGACCCGCTGCATTGGAGCACCATGAAATGCTA
AGGCAGCGCTGTGGACAGCTAGGTTCTGTGGCTCCTCCCCAGTGACTACC
TGGCCACTGTGTAAAGAATGCACATCCTTGTTTGAAAGCAGGTTCCCCTT
AAATATCCACTAAACTGCGCAATCTCAGGTTACAGCTCCTCAACCTCCAG
AACGTGATTCCAGCATGCCTAAGGGCGGAGTTATCGGGCCCTCTTTACGT
TAGGTTGACCGCCCACTCTGATCTCTTGTGACAATTCTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_o05.g1 MSMg01no096_o05.g1 CHROMAT_FILE:
MSMg01no096_o05.g1 PHD_FILE: MSMg01no096_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:25 2005
         (301 letters)



>mm_chr6_85076672_85077372
          Length = 701

 Score =  530 bits (274), Expect = e-155
 Identities = 292/298 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgtctcctccccgtcatgggcgaacaaggacttactgggtcaggaccccctaactcagag 63
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctcctccctgtcatgggcgaacaaggacttactgggtcaggaccccctaactcagag 442

                                                                       
Query: 64  ccctcttagccccagcaccctggaaggttggggtagaaaatttgcagagcataagttcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ccctcttagccccagcaccctggaaggttggggtagaaaatttgcagagtataagttcta 382

                                                                       
Query: 124 ctgtcaacagcccttttccccccttaatgcctacaaaagaaacctgagcagattggggaa 183
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctgtcaacagcccttttctccccttaatgcctgcaaaagaaacctgagcagattggggaa 322

                                                                       
Query: 184 atgccctacagttctaggtagcaggagggtcgacctgtttgttcccaggtcgcatgtcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgccctacagttctaggtagcaggagggtcgacctgtttgttcccaggtcgcatgtcca 262

                                                                     
Query: 244 agaggccaggttgtctctgccagccatggaccactggcctgtcctctcaagagccacg 301
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agaggccaggttgcctctgccagccatggaccactggcctgtcctcttaagagccacg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)