BAC Information

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BAC

Clone NameMSMg01-097C02
Chromosome6 (Build37)
Map Location 78,345,118 - 78,345,400
singlet/doubletsinglet
Overlap genenone
Upstream geneCtnna2, LOC668169, EG434050, Pap, Reg3d, Reg3a
Downstream geneReg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097C02.T7 (MSMg01no097_c02.b1)MSMg01-097C02.TJ (MSMg01no097_c02.g1)
ACCAG313640AG313641
length716724
length of high quality
(start - end)
301 (69 - 369)487 (77 - 563)
definitionCHROMAT_FILE: MSMg01no097_c02.b1 PHD_FILE: MSMg01no097_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:45 2005CHROMAT_FILE: MSMg01no097_c02.g1 PHD_FILE: MSMg01no097_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAAAGTTTCCCTCAGATAGAATGAACATTCCTTGAGTATGGACAG
AACCTACAAAAACTATAGAATACAAACTCTCAATGATGCTGTATCCTACA
GAAAATGAAATTCTGGAAGATGAAATGGTCACCAGTATTCAACTGACATT
GATTTCATGAAAATGGAGATGTTGGGTGACTTTGGGATGAATCCATTCTT
GTCATGAGATCTTTTTAAAAGTAGATCTCCTCTGGTTAGCAGTGTGAGGA
AGCATACTTTCAAAAGAGCAAAAGAAAACATTGTCTCAGAAGATGGAAAG
AAGTGAGTTCAGTGCCCCACCAGAATGAGAGTAGGAATTTATCACAAAGC
AGTAATAAAACAATGCACACAGTTGCTAGCAGTTGCTGGAAGAATATATG
GAGCATAGGCTAGAATCATTAGTCTATGGAGTCATAAATACTTTCTCTAA
ATAGCAAGGTCTAAAAATCACAAACTTATTTCAAAAAATTTATTTCTTTA
ATTTTTACATATGTGTATGCATTTGTATGCTCGTACCCATATGTACAGGT
TACCATGTAAACAAGAAGAAGCCATTGGATCCCCTGAATTTGGAATTACA
GGAGGTTATGAGATGCCTGATACAGACACTAGGAAATTTAGTTGGGTCTT
CTTCCAAAACAGCACA
NNAATCATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGAGGTCATGGCTCCTAGAA
ATGACAGGGATGCTTCACTCATGACATCTCCATGGGGTGGCTTCCTAAAT
GAGGTATTGTCCTTAACAGTGACAATAAAAATATGAGCACACTAGCATGG
AAGGAGGAAGTCTCATGGGTCCCCAACTATAGACAAAGAACTACAGGAAC
TTAGGAATGCTGTGAGTTCAAAAGAACGGTATTCTCCACATGATCAACCC
TGGAATCATATGTATGCACTATGTATACTAGTAGCACTAAACACACTGAG
CAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAACAATA
ACAAATAAGTAAAAAGAGTCCATGATTTCAATTTGGGGGCTACATTGAGA
GAGGTTGAAGGAAGGAAAGGAAATAGAAAAATAATATAAAGGTATTTTCT
TTAAAAAATAATATTAATACAATAACAAAAATAAATGTTACAAGCAAAAC
AAAAATCACTATAGATTTGGTCAACATAAGGAATAGTCATGGGTACAAAT
ACCACACACAAACAAACCTGTAAAAGTAACAAATACTAATAATTTTTAAA
TTAAAAAAAAGTAAACTCTCAAGGGCATTCAAAGACCAGTTTATTGCCTT
TCAAGAGAGCACACAACAACAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_c02.b1 MSMg01no097_c02.b1 CHROMAT_FILE:
MSMg01no097_c02.b1 PHD_FILE: MSMg01no097_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:45 2005
         (301 letters)



>mm_chr6_78344918_78345618
          Length = 701

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatagaatgaacattccttgagtatggacagaacctacaaaaactatagaatacaaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agatagaatgaacattccttgagtatggacagaacctacaaaaactatagaatagaaact 260

                                                                       
Query: 61  ctcaatgatgctgtatcctacagaaaatgaaattctggaagatgaaatggtcaccagtat 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ctcaatgatgctgtatcctacagaaaatgaaattctggaagacgaaatggtcaccagtat 320

                                                                       
Query: 121 tcaactgacattgatttcatgaaaatggagatgttgggtgactttgggatgaatccattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaactgacattgatttcatgaaaatggagatgttgggtgactttgggatgaatccattc 380

                                                                       
Query: 181 ttgtcatgagatctttttaaaagtagatctcctctggttagcagtgtgaggaagcatact 240
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 ttgttatgagatctttttaaaagtagatctcctctggttggcagtgtgaggaagcatact 440

                                                      
Query: 241 ttcaaaagagcaaaagaaaacattgtctcagaagatggaaaga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaaagagcaaaagaaaacattgtctcagaagatggaaaga 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)