Query= MSMg01no097_o18.b1 MSMg01no097_o18.b1 CHROMAT_FILE:
MSMg01no097_o18.b1 PHD_FILE: MSMg01no097_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:50 2005
(288 letters)
>mm_chr6_52567880_52568567
Length = 688
Score = 545 bits (282), Expect = e-160
Identities = 285/286 (99%)
Strand = Plus / Plus
Query: 1 gaccaactccacaaagtcatcctctgacctacacacgtcatacacacatactaataataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccaactccacaaagtcatcctctgacctacacacgtcatacacacatactaataataa 260
Query: 61 attttaatttttaaggtaactaaataccactacaaatctttatactgtaatcttacataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaatttttaaggtaactaaataccactacaaatctttatactgtaatcttacataa 320
Query: 121 ctaattcagtgtaacaagaagggctaataattaattattctttcacctacattcaaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaattcagtgtaacaagaagggctaataattaattattctttcacctacattcaaaaat 380
Query: 181 gacatgaagctgaacatgataatggatgtctgcaattctagtttgggaggtagagacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacatgaagctgaacatgataatggatgtctgcaattctagtttgggaggtagagacagg 440
Query: 241 ggaatcaatgccaccctggttaatacataagactctatcacaagta 286
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatcaaggccaccctggttaatacataagactctatcacaagta 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no097_o18.g1 MSMg01no097_o18.g1 CHROMAT_FILE:
MSMg01no097_o18.g1 PHD_FILE: MSMg01no097_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:50 2005
(246 letters)
>mm_chr6_52725296_52725943
Length = 648
Score = 433 bits (224), Expect = e-126
Identities = 242/248 (97%), Gaps = 2/248 (0%)
Strand = Plus / Minus
Query: 1 tcaccttcactgtgc-taggcccctgacgtggtggataacctca-caccaagaaaaggat 58
||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| |
Sbjct: 448 tcaccttcactgtgcataggcccctgacatggtggataacctcagaaccaagaaaagggt 389
Query: 59 agtacctagagaagggggtgccaggctctctgcaccccagacaccctggcctgtcatggc 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agtacctagagaagggggtaccaggctctctgcaccccagacaccctggcctgtcatggc 329
Query: 119 aggatgttttgttggcggtggcagctgtgtgggcagtggctttggtggtgtctgtccaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aggatgttttgttggcggtggcagctgtgtgggcagtggctttggtggtgtctgtccaaa 269
Query: 179 tccctcctgtgtgcttcctgcctccctgacgcctccctcccctctgggcagcttccactc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tccctcctgtgtgcttcctgcctccctgacgcctccctcccctctgggcagcttccactc 209
Query: 239 ttctgctt 246
||||||||
Sbjct: 208 ttctgctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 648
Length adjustment: 9
Effective length of query: 237
Effective length of database: 639
Effective search space: 151443
Effective search space used: 151443
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
