Query= MSMg01no098_l13.b1 MSMg01no098_l13.b1 CHROMAT_FILE:
MSMg01no098_l13.b1 PHD_FILE: MSMg01no098_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:55 2005
(440 letters)
>mm_chr6_25354776_25355615
Length = 840
Score = 779 bits (403), Expect = 0.0
Identities = 426/441 (96%), Gaps = 13/441 (2%)
Strand = Plus / Plus
Query: 1 ccctgtttta-aaaataaagtgaagaatgacccagcaggataactaatgactccatatgt 59
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ccctgttttacaaaataaagtgaagaatgacccagcaggataactaatgactccatatgt 271
Query: 60 acacacacacacacacacacacacacacacacacacacacacacacacacacacactcac 119
||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 272 acacacacacacacacacacacacacacacacacatacacacac------------tcac 319
Query: 120 acacatattcactcatacacaaagtaagtgagaaacacagaaataatggctacaattaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acacatattcactcatacacaaagtaagtgagaaacacagaaataatggctacaattaga 379
Query: 180 tattagtttgggatatgttactcaaagagactaattggaacagttaatactcattaatgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tattagtttgggatatgttactcaaagagactaattggaacagttaatactcattaatgt 439
Query: 240 tggtacaagtctgataattttttattctaactttaccttgatggtcaaagttttctttta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tggtacaagtctgataattttttattctaactttaccttgatggtcaaagttttctttta 499
Query: 300 gaagtgtatggcatagtaaataatttactaataatgtgtcattagatctgcttatgcttg 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaagtgtatggtatagtaaataatttactaataatgtgtcattagatctgcttatgcttg 559
Query: 360 ttgactgattgatatgagtttttccttcatgcttcttatattttgaccaaaacgttacat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgactgattgatatgagtttttccttcatgcttcttatattttgaccaaaacgttacat 619
Query: 420 agcataataatatttcttgtc 440
|||||||||||||||||||||
Sbjct: 620 agcataataatatttcttgtc 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_l13.g1 MSMg01no098_l13.g1 CHROMAT_FILE:
MSMg01no098_l13.g1 PHD_FILE: MSMg01no098_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:55 2005
(511 letters)
>mm_chr6_25534081_25534991
Length = 911
Score = 926 bits (479), Expect = 0.0
Identities = 503/511 (98%)
Strand = Plus / Minus
Query: 1 attaaatggctgagaatgactaaattttcacttgctggtcataactcatccatatttctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 attaaatggctgagaatgactaaattttcacttgctggtcataactcatccatatttctt 697
Query: 61 aaatattaatttacttttatatgtagaagtgttttgcccatgtataagtatgctttgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaatattaatttacttttatatgtagaagtgttttgcccatgtataagtatgctttgtgc 637
Query: 121 atacctagtacctgtggaaactaggaagttgaccatgtccttggaactggactcatgcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atacctagtacctgtggaaactaggaagttgaccatgtccttggaactggactcatgcat 577
Query: 181 ggctttgagcctccatgtgaggactggaaactgaactcaggtcctctgctgagggcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 576 ggctttgagcctccatgtgaggactggaaactgaactcaggtcctctgctgaggggacct 517
Query: 241 atgtaaagatctgggtgttttgtataaactgcaggtgcttgcatgccatggtacacacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgtaaagatctgggtgttttgtataaactgcaggtgcttgcatgccatggtacacacat 457
Query: 301 agaggggtcagacaaacttactgttattatttacctaactcttatgaatagctaagaaaa 360
||| || ||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 456 agaaggctcagacaaacttactgttattctttacctaactcttatgactagctaagaaaa 397
Query: 361 tgggcaaaaagcctgcattgcttgtggagcctctggcgtctccttgaccaactcttgtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgggcaaaaagcctgcattgcttgtggagcctctggcgtctccttgaccaactcttgtga 337
Query: 421 aaatattttacaaacgaaaaataacgagatggtgtaattatacacagcggggagatctaa 480
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 aaatattttacaaaataaaaataaagagatggtgtaattatacacagcggggagatctaa 277
Query: 481 tcagggagggatttggggatattgcatagaa 511
|||||||||||||||||||||||||||||||
Sbjct: 276 tcagggagggatttggggatattgcatagaa 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
