BAC Information

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BAC

Clone NameMSMg01-098M22
Chromosome6 (Build37)
Map Location 133,243,504 - 133,244,118
singlet/doubletsinglet
Overlap gene5530400C23Rik
Upstream geneLOC631126, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M22.T7 (MSMg01no098_m22.b1)MSMg01-098M22.TJ (MSMg01no098_m22.g1)
ACCAG314893AG314894
length707699
length of high quality
(start - end)		621 (46 - 666)546 (73 - 618)
definitionCHROMAT_FILE: MSMg01no098_m22.b1 PHD_FILE: MSMg01no098_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005CHROMAT_FILE: MSMg01no098_m22.g1 PHD_FILE: MSMg01no098_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCATTTCATTTTGCATTTGTGTTAGTGTATACATTAATAGATAT
TCATGAACAAGATGGAGAAATCTGTGGATTTTCTCTGTTTTCTCTTTGCT
TCCCAATTGCTATGTAATTGATTAAAGGAATAGCAAATTTTCACCAGGTA
TTTAGTATATTTGCTGGACATCATTATTGTTGCTTGTTTTCTGTATTAAA
ATATATAGGTATTGAACTGCTTTCATTTCAGAGATGGCAAAGTCTAATTA
AAATTCTTTGAACATTCGAAATTTTATACTGTGCCGTGAAGTACACTTTC
CAACCATCCTGATGTTAATGTACTTTCCTTATTATTATTCTTTTGACATT
GGAAATGCCTAATATGGTAAATAAGTCTCCAAATCTTTTTGATTGCCAGG
TGTACGGTACAATACTCAAACCAGGGTTATGAATACAAAAAACTCTGTAT
TTTTGGAATGTGGAATTAGAAAGCCAAGATGCAGATATCTGGGAGAAGAA
GTTAGCATTTGGTAGACATGTTCGGAGGGAAAGGACTTTGTGATCAGGTT
AGGGAAAAAAAAATAAGGTATATCTTTGATCAAAGTGCTCATATCTTCTG
GCCCTTTCTATGCAGACCCTGCAGAGAAAACCCAGGACTCAGAGTTAGGT
CCTTCTG

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGGTGGAATTTTTGGGGTTACTTAAG
TACACTATCATCTGCAAACTTTTATATTTTGACTTCTTTCTTTCCAATTT
GTATTCCTTTGACCTCTTCTTTTCTAATTGCTCTAGCTAGAACTTCAAGT
ACTATATTGATTAGGTAGGGAGAGAGTGGGCAGCCTTGTCTACTCCATGA
GTTTAGTAGGATTTCTTGAATTTTCTCTCCATTTAGTTTGATGTGGGCTA
CTGGTTTGCTGTATATTGCTTTTACTATGTTTACATATGAGGCTTGAATT
GCTGATCTTTCCAAGACGTTTTTCATGAAGGGTTGTTGGATTCTTTCAAA
TGCTTTCTCACCATCTAATGAAATAAATGATCATGTTTTTTTTTTCCTTT
GTGTTTGCTTATGTAGTGGATTACATTGATGGATTTCCATATACTGAACC
ATCCCCGAATCCCTGGTATGAAGCCTACTTGATCATAACGGGTGATTGTT
TTGATGTATTCTTGAATTCGGTTTGTGAGAATTTTATTGAGTATTTTTGC
ATTGATATTCCTAAGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGAT
CTTTGTGCAGTTTAAAATAGAACGGCTTGCCGGGTCGCCCGTTTGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m22.b1 MSMg01no098_m22.b1 CHROMAT_FILE:
MSMg01no098_m22.b1 PHD_FILE: MSMg01no098_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:02 2005
         (621 letters)



>mm_chr6_133243300_133244319
          Length = 1020

 Score = 1145 bits (592), Expect = 0.0
 Identities = 610/616 (99%), Gaps = 1/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcatttcattttgcatttgtgttagtgtatacattaatagatattcatgaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcatttcattttgcatttgtgttagtgtatacattaatagatattcatgaaca 264

                                                                       
Query: 65  agatggagaaatctgtggattttctctgttttctctttgcttcccaattgctatgtaatt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatggagaaat-tgtggattttctctgttttctctttgcttcccaattgctatgtaatt 323

                                                                       
Query: 125 gattaaaggaatagcaaattttcaccaggtatttagtatatttgctggacatcattattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gattaaaggaatagcaaattttcaccaggtatttagtatatttgctggacatcattattg 383

                                                                       
Query: 185 ttgcttgttttctgtattaaaatatataggtattgaactgctttcatttcagagatggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgcttgttttctgtattaaaatatataggtattgaactgctttcatttcagagatggca 443

                                                                       
Query: 245 aagtctaattaaaattctttgaacattcgaaattttatactgtgccgtgaagtacacttt 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 aagtctaattaaaattctttgaacattcaaaattttatactgtgccgtgaagtacacttt 503

                                                                       
Query: 305 ccaaccatcctgatgttaatgtactttccttattattattcttttgacattggaaatgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccaaccatcctgatgttaatgtactttccttattattattcttttgacattggaaatgcc 563

                                                                       
Query: 365 taatatggtaaataagtctccaaatctttttgattgccaggtgtacggtacaatactcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 taatatggtaaataagtctccaaatctttttgattgccaggtgtagggtacaatactcaa 623

                                                                       
Query: 425 accagggttatgaatacaaaaaactctgtatttttggaatgtggaattagaaagccaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accagggttatgaatacaaaaaactctgtatttttggaatgtggaattagaaagccaaga 683

                                                                       
Query: 485 tgcagatatctgggagaagaagttagcatttggtagacatgttcggagggaaaggacttt 544
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 tgcagatatctgggagaagaagttagcatttggcagacatgttcggagggaaaggacttt 743

                                                                       
Query: 545 gtgatcaggttagggaaaaaaaaataaggtatatctttgatcaaagtgctcatatcttct 604
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 744 gtgatcaggttagggaaaaaaaaataaggaatatctttgatcaaagtgctcacatcttct 803

                           
Query: 605 ggccctttctatgcag 620
           ||||||||||||||||
Sbjct: 804 ggccctttctatgcag 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space:   617110
Effective search space used:   617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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