BAC Information

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BAC

Clone NameMSMg01-098O05
Chromosome6 (Build37)
Map Location 85,092,442 - 85,244,467
singlet/doubletdoublet
Overlap geneLOC665086, LOC665089, Emx1, Sfxn5
Upstream geneDysf, 4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr
Downstream geneRab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O05.T7 (MSMg01no098_o05.b1)MSMg01-098O05.TJ (MSMg01no098_o05.g1)
ACCAG314953AG314954
length790769
length of high quality
(start - end)
129 (127 - 255)243 (126 - 368)
definitionCHROMAT_FILE: MSMg01no098_o05.b1 PHD_FILE: MSMg01no098_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:08 2005CHROMAT_FILE: MSMg01no098_o05.g1 PHD_FILE: MSMg01no098_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:08 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(85,092,442 - 85,092,570)(85,244,225 - 85,244,467)
sequence
GTGTGTGGGTGGGTTGTGCTTTGCCCCCGCGCCTCCCTTCTTCCTCAACC
ACCNCNNNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAGA
GGATCCGCGGAATTCAAAACTCCCCGTAATCCACAGCTACATAGATTTAA
GAAAGAAGACAGTGAAGGCTCGGTGCACAGCTCTCTCCCCTACATCAGTT
GGCGGCAGGCAGGAGGACCTACAATCCTTGGCTGCCTGGACTGCACACAG
AAAGCTGTAGTCAAAGCAAGAGGAGACAGAAAATAAAAACATTCCATTCC
TCAGNAGAAAGACCTGACAGTTATGTCGCCATGGGAATTAACTCCATGTT
CACTGGCAAAGAAAAGAAAGGGCATGCGTCTAATGTGTAGACAGTCAGTT
GTGAGGAGGGAAGGGTAACAACAGAGCTGGAAATCTCTAGATACTGCTAT
GAGGACTGATTTGTGCATGACACACCACTGATACACGCGTGACCACAGAG
GTCTGTCTCTCTGTGTCTGTGTCTCTCTCTGTCCCTGACTCTGTGTGAGA
GACTGTCGTGTGTGTGCCTGCGTGTGCGTGTGACATACTTACAGATACAT
AGACTCTTGTGTTTTTACCCCCCCCCCTTTTTTCCCTACCCCCCCCTTTT
CCCTTCCTCCCTTCTTCTTTTTTTTTTTTTCTTTCTCTCTCCTTTCCCCT
TCCTTCCCCGCCTATCTTTTTTCTTTATTTTCCCTTCCTCCTTTCTTTTC
TCTCTTCCCCATCTTCTCCCCCTTATTTTTTCTTTCCCCG
CCCCCCCCCACCCCCCCCCCCCCCCCTCCCCCCCCCCCTNNATTCCTTAT
TTTCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTATAATAGGCTTGAAAGCAAAT
ATCCCTATCTTCATACTACAAAAGAGATATTGGAGGCTCAGAAAGACTAA
ATGAAGAATCTCCCTTCTCCTAGTGAACTAATGGGGGATTTGAAATCAAA
CCTGGGCTCCTCTGCGGGGCCTGACCTCTACCTAGAGAGAAGTTTCTTGC
ATAATGAAGCCACAGCTGCTGACACAGTACCATAGAAGCAGGCAGGACAT
CCCTCTTCTTTCCTGTGTCTGTAGAATTGGGGGCTCCCTGCACCCCACAT
AGGCTTGTATAGGTACATGGTACCTGGAGTTACCATGGTAACACAATTAA
TGGTGCGTTATAACGCAATGGGCTCAACTGATCAATTAGGAAGCTTTTTG
CTTGTTGAACGGAGGCGTCCTTCCCGTATAGAAGGGTCCCCTTCAGGCTC
TGTTTAATTACCTTCTGGAGGTCGCTTTAAATAGGCTCTGCCCTTGCTGC
CCTATGAGGTTTAAAGAAGCTGCTTGTTAGGAGACTTAGGGTAAGTGAGT
GATCCACACTGGGGTCGGGTTTGTCGCTCTTCTCTCGGGACGCTGCTCTG
TGTCCTGTCTCCTACCCCCACGCGTGAACTCTACCCTGGCTCTTCCTTAT
GCCTTCGTGCAGGTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o05.b1 MSMg01no098_o05.b1 CHROMAT_FILE:
MSMg01no098_o05.b1 PHD_FILE: MSMg01no098_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:08 2005
         (129 letters)



>mm_chr6_85092242_85092770
          Length = 529

 Score =  250 bits (129), Expect = 3e-71
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatccacagctacatagatttaagaaagaagacagtgaaggctcggtgcacagctctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatccacagctacatagatttaagaaagaagacagtgaaggctcggtgcacagctctct 260

                                                                       
Query: 61  cccctacatcagttggcggcaggcaggaggacctacaatccttggctgcctggactgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccctacatcagttggcggcaggcaggaggacctacaatccttggctgcctggactgcac 320

                    
Query: 121 acagaaagc 129
           |||||||||
Sbjct: 321 acagaaagc 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no098_o05.g1 MSMg01no098_o05.g1 CHROMAT_FILE:
MSMg01no098_o05.g1 PHD_FILE: MSMg01no098_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:08 2005
         (243 letters)



>mm_chr6_85243946_85244588
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttataataggcttgaaagcaaatatccctatcttcatactacaaaagagatattggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttttataataggcttgaaagcaaatatccctatcttcatactacaaaagagatattggag 463

                                                                       
Query: 61  gctcagaaagactaaatgaagaatctcccttctcctagtgaactaatgggggatttgaaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gctcagaaagactaagtgaagaatctcccttctcctagtgaactaatgggggatttgaaa 403

                                                                       
Query: 121 tcaaacctgggctcctctgcggggcctgacctctacctagagagaagtttcttgcataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tcaaacctgggctcctctgcggggcctgacctctacctagagagaagtttcttgcataat 343

                                                                       
Query: 181 gaagccacagctgctgacacagtaccatagaagcaggcaggacatccctcttctttcctg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 342 gaagccacagctgctgacacagtaccacagaagcaggcaggacatccctcttctttcctg 283

              
Query: 241 tgt 243
           |||
Sbjct: 282 tgt 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)