BAC Information

Click to search

BAC

Clone NameMSMg01-098P22
Chromosome6 (Build37)
Map Location 104,514,299 - 104,514,887
singlet/doubletsinglet
Overlap geneCntn6
Upstream geneChl1, LOC100043345
Downstream geneLOC384470, LOC100043716, LOC100043350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098P22.T7 (MSMg01no098_p22.b1)MSMg01-098P22.TJ (MSMg01no098_p22.g1)
ACCAG315034AG315035
length720705
length of high quality
(start - end)
590 (36 - 625)368 (54 - 421)
definitionCHROMAT_FILE: MSMg01no098_p22.b1 PHD_FILE: MSMg01no098_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:16 2005CHROMAT_FILE: MSMg01no098_p22.g1 PHD_FILE: MSMg01no098_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTAC
TTTCGATGAAAATTGTTATAATTTAAAGGGAAATTACTATAATTTGAAGA
TGAAGAGTAACGATACTATTGTGGTATAATATCAGTAGACATCATATATC
ACAAACAGGATTAAGCAAAAATAATCGTTTTAGTGGCTCAAGCATTTTAA
ATTTCTATATAGAACAAGCATGGTTGGGTATGTCATGTTTCTCTGATTTT
AGGTATTACTGTAGATTGGATGGAAGGGCAAATTTCTATAATGTTGGAAG
CATGAAAAGCAAGTCTGTGACTCACAGCAGCAAGGGCAAGATTATTCTCA
GGGCAAAGAAAACAGGAAGCTAAAACAACAAGAGGCAACATGCATAACTA
ATAAGCAGAAGATTCTAGATTCTGCTGTCGTCATGGAAGTCTTATATACT
GAAGGAGTTGTTGAGGAAAGAGGGAGCTGTTTGGGGGAGCTACTCACTTG
GAGAAAGGGTTCTGACAGTTAATTTTCTATCCTTTATAACACACTTCAAT
ATTAATGAGGGCAATGAACTTTCCATAGTATTAGCAGAAATTCCTAAAAT
TGGGAACTGTGTGCTGTTAGCAGCATCTTCAGACTAGGTCATAGTAACAC
CTGTGAGAAACCATTTTATATGAGATGAAGATATATGAGGGTTATTTTAT
TATTATTACTTTTTTTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCATGCTTGTACATCACTCTGGAAATCAGTCTGGAGTTTCCTCAGAAAA
TTGTACATAGCACTACCAGAGGATCGCGCAATACCTCTCCTGGGCATATA
TCCAGAAGATTTTCCAACTAGTAAGAATGACACATGCTCCACTATGTTCA
TAACAGCCTTACCTGTAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGATGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCCATTAAAAAGAATGAATTTATGTAATTCCTAGGCAAATGGA
TGGGTCTGGATGGCATCATCCTGACTGAGGTAACCTAATCATAAAAGGAC
TCACATGATATGTACTCACTGACAAGTGGATATTTGCACAGAAACTTAGA
ATACCCAAGACACAAGATACAATTGGCAAAACACATGAAACTCAAGAAGA
ACGAAGAAGAAAGTGTGGATACTTTGCACCGTCTCAGAATTGGAAACTAA
ACACCCATGGAAGGCGTTACAGAGACAAAGTTTTGGGCTGGGACGAAAGG
ATGGACCATCTAGAGAGAGCCATACCTGGTGATCCATCCCATAATCAACC
TCCCAATGCTGATATCATTGTTCACCCTAACAAGACTTTGTCGAAAAGAT
CCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_p22.b1 MSMg01no098_p22.b1 CHROMAT_FILE:
MSMg01no098_p22.b1 PHD_FILE: MSMg01no098_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:16 2005
         (590 letters)



>mm_chr6_104514098_104515087
          Length = 990

 Score = 1069 bits (553), Expect = 0.0
 Identities = 580/589 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   gcggaattctctactttcgatgaaaattgttataatttaaagggaaattactataatttg 61
           |||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 202 gcggaattctcttcattagatgaaaattgttataatttaaagggaaattattataatttg 261

                                                                       
Query: 62  aagatgaagagtaacgatactattgtggtataatatcagtagacatcatatatcacaaac 121
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagatgaagagtaaagatactattgtggtataatatcagtagacatcatatatcacaaac 321

                                                                       
Query: 122 aggattaagcaaaaataatcgttttagtggctcaagcattttaaatttctatatagaaca 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 322 aggattaagcaaaaataatcgttttagtggctcaagcattttaaatttctatgtagaaca 381

                                                                       
Query: 182 agcatggttgggtatgtcatgtttctctgattttaggtattactgtagattggatggaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agcatggttgggtatgtcatgtttctctgattttaggtattactgtagattggatggaag 441

                                                                       
Query: 242 ggcaaatttctataatgttggaagcatgaaaagcaagtctgtgactcacagcagcaaggg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggcaaatttctataatgttggaagcatgaaaagcaagtctgtgactcacagcagcaaggg 501

                                                                       
Query: 302 caagattattctcagggcaaagaaaacaggaagctaaaacaacaagaggcaacatgcata 361
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 502 caagattattctcagggcaaagaaaacaggaagctaaaacaacaggaggcaacatgcata 561

                                                                       
Query: 362 actaataagcagaagattctagattctgctgtcgtcatggaagtcttatatactgaagga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 actaataagcagaagattctagattctgctgtcgtcatggaagtcttatatactgaagga 621

                                                                       
Query: 422 gttgttgaggaaagagggagctgtttgggggagctactcacttggagaaagggttctgac 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttgttgaggaaagagggagctgtttgggggagctactcacttggagaaagggttctgac 681

                                                                       
Query: 482 agttaattttctatcctttataacacacttcaatattaatgagggcaatgaactttccat 541
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 agttagttttctatcctttataacacacttcaatattaatgagggcaatgaactttccat 741

                                                            
Query: 542 agtattagcagaaattcctaaaattgggaactgtgtgctgttagcagca 590
           |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 742 agtattagcagaaattactaaaattgggaactgtgtgctgttagcagca 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)