BAC Information

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BAC

Clone NameMSMg01-099C19
Chromosome6 (Build37)
Map Location 77,609,479 - 77,609,821
singlet/doubletsinglet
Overlap geneCtnna2
Upstream geneLOC100042956, Lrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C19.T7 (MSMg01no099_c19.b1)MSMg01-099C19.TJ (MSMg01no099_c19.g1)
ACCAG315172AG315173
length1,446675
length of high quality
(start - end)
---343 (49 - 391)
definitionCHROMAT_FILE: MSMg01no099_c19.b1 PHD_FILE: MSMg01no099_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:32 2005CHROMAT_FILE: MSMg01no099_c19.g1 PHD_FILE: MSMg01no099_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATTTGGTAGTCTTTATTCGGCGTCGTCTGGTGACGTGTGTGTCTACT
TTGCCCGCGATACGTCTCTACTTTACTGTTACCGCCTCGCTATTCCCGCA
CTCTCATCATCACTGGCGCTGCTACTGGGCGTCGCGTTTTTGCTCGTTGA
TTTATTGCCGTCTCTCTCTTATCGTTTTGTCGGCTTTCCGCGCGGATTTT
CCGCCCGCTCCTCTTATACGTCCCTTCCGCGTTCCGTANTTGCTTGTTTT
TACTCCGGCTCTGCTGTCGGCGCGGCTCACCAGTTTTTTCGCTGCCGCTC
TTTCTTCCGCCCTATCACTTTATGTCGACGTCCTTAATCGTATGTCGGCA
CGGTATCGAACATTTGTGGGGAGTTCGAGCGCGGTGCAGTCGGAGCGTAG
CGCGGGTCGGTGTTGTGGGCATTGTTATTCGTGCGGACTGGCCTTTTTTA
CCCGCGGCCGTTGTGCTTGCCGGGTGCGGCGCGAGCGGGGCTCGCGCGAC
GCGCTCTGTATATTCATCGCGACGATACCCGCATTTCGTTCCGCCGCTAT
TTATTGTATTATAGGCGCGCCGCAACCGACCGCGTGCTGCTGTCTGTGTG
TGTGATTTATTCTATTCGTGCGCGGGCGAGATCGCGCGTGGGTGCGGTGG
CGGTCTCNCGTGATACGCTGTTTGCCACACGNGCCGCGCCCGCGCGTCTT
NGTCTTATACGGCGGTATTGTCGGATGCTGGCGCGCGCGCCGGTTTATTG
ATTATATCATACTACTCGTCGTCGCTGCTCGACCCGCGCCGCCAGATCCC
GACGACGATTCTCACCTTATATACGAAGGGCGCGCGGGCGGTGTGATNCT
CACGCGCGCGCGTCGAGTCTTCCGTGTGTCGTGTGTCGCGTCGTTGTGGT
ATCGTCGGCGCCGTCGTCTCGCTTATCGTTCAACGCCTGGTTTTCGCGCC
ACACGTGTCGTGTCTCCGTTATTTTTGCTGTTGTGTTCACACTGCTCTCT
CACTCATCAGTATGATCGTATTCGTGCGGCGCGTCGCCGCGGGAGCGTTG
TGTGCTCTGTTGTTACGCGCTCGAGCTAGCCTTGTTGTCTGTCGCGACGC
GCTGCGCGCGCGTGTGTGTTGTATGTTGTGTCTTCGCTACGGCGTTCGCG
CGTCTGTGGTCGCGTNATCTCGTCGTGGTGTTCTACGCGTCGCTCGCCGT
ACGCACTGGGTGNCGAGTAGTGTCTTGACTCTATATTCTCTCGACGGATC
GTCNTGTCTAGCTCGCTGTGTGATCAGCTCTGTCGNGTCGACTCCATATC
ATGCTGTCGTATCAGTACTCTGCTCACCGCAGTTGCACGGTCGTGGCTCG
AGGGTGTCTGTCGNCACACACGGCGCGACTNGTGATGTCTTGCACCGTCA
CACGCGCGCGTCCGGTGCTGATCGCTCTNTCTCTGCTCCTTCTCTN
GCCTGGCTTCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA
ACTGAGGGTATGAAAGTGAAGAAGAGTGCAAGCTGCAGAGCATTGCAGAA
TAATCATGTTAACAGGGAACAGTGGCCCCGGAAGCCAAAGGGAGAGAGGC
ATTCCAACAACCCTTCATGGGGCCGATGTGCGAAGATACATTGACAACAT
TTTAATTACTAAGTAAGCAGTTGGTCTATATGAAGTCTGAAAAACCAGAC
TATTAAAAGGTACTAAAAATAACATTCTTAGTTCTCACAACTTAAGACCA
ATCACCAGGGGACTGCTGCTGACTGCCCCCTGAACAGTTCTTATCTGCAT
TTTTTTGCCAGCATTTAAACTGATTACATTGTTTCCTTCTGCTTAACTAC
ACAAATTATTGACAGCTAATGAATTTTTTTCTTTACCCAACACGGAACTC
TCGGAGGTGAGAAAAAGAAAGAAGCAAAACCCTCCATCTTTCATTGTCTT
GCATGCATTTCTGCCTTTGCACCTGTCTGCCTCTCCTCCCACCTTCTCTC
TGTTGATGTTTAGTGAAGCCGTATTTCTTTGTGCCCAGGCAGATCCCCGA
TTTGACGTGTTTGATGTGCCCACATTTTTTTTCTACCTCCTTTGTCCCCC
CCGACCCCTTTTCCTACCCCCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c19.g1 MSMg01no099_c19.g1 CHROMAT_FILE:
MSMg01no099_c19.g1 PHD_FILE: MSMg01no099_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:32 2005
         (343 letters)



>mm_chr6_77609279_77610021
          Length = 743

 Score =  617 bits (319), Expect = 0.0
 Identities = 337/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactgagggtatgaaagtgaagaagagtgcaagctgcagagcattgcagaataatcatg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactgagggaatgaaagtgaagaagagtgcaagctgcagagcattgcagaataatcatg 260

                                                                       
Query: 61  ttaacagggaacagtggccccggaagccaaagggagagaggcattccaacaacccttcat 120
           |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ttaacagggaacagtggccctggaagccaacgggagagaggcattccaacaacccttcat 320

                                                                       
Query: 121 ggggccgatgtgcgaagatacattgacaacattttaattactaagtaagcagttggtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggccgatgtgcgaagatacattgacaacattttaattactaagtaagcagttggtcta 380

                                                                       
Query: 181 tatgaagtctgaaaaaccagactattaaaaggtactaaaaataacattcttagttctcac 240
           ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 381 tatgaagtctgaaaacccagactattaaaaggcactaaaaataacattcttacttctcac 440

                                                                       
Query: 241 aacttaagaccaatcaccaggggactgctgctgactgccccctgaacagttcttatctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacttaagaccaatcaccaggggactgctgctgactgccccctgaacagttcttatctgc 500

                                                      
Query: 301 atttttttgccagcatttaaactgattacattgtttccttctg 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttttttgccagcatttaaactgattacattgtttccttctg 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)