BAC Information

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BAC

Clone NameMSMg01-100D09
Chromosome6 (Build37)
Map Location 82,688,551 - 82,688,887
singlet/doubletsinglet
Overlap geneHk2
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198, Tacr1, Pole4, LOC100043412
Downstream geneEG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100D09.T7 (MSMg01no100_d09.b1)MSMg01-100D09.TJ (MSMg01no100_d09.g1)
ACCAG315967AG315968
length718787
length of high quality
(start - end)
80 (27 - 106)333 (136 - 468)
definitionCHROMAT_FILE: MSMg01no100_d09.b1 PHD_FILE: MSMg01no100_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:00 2005CHROMAT_FILE: MSMg01no100_d09.g1 PHD_FILE: MSMg01no100_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATACGACTACTATTCGAGAGAGGATCCGCGGAATTCATTATTATTCC
TGAAAATTGTGTGTGTTTGTGTGTGTGTTTCTTGCTGTGTGTGTGAGTGC
AGTGTCCATGGAGTCCTGTATAGGGCAGCAGACCCCTTGAAATGGGAGTT
ACAGGCGGTTGTGACCCTCCAGCTCTCCAGCCCAGCTTTTTGTTTGCTTT
TCCTTTTAGTTAGTTTTGTTTTTGTTTTGATTCGATTTCGATACACACTC
TCACATTATAGCTCTGGCTACCGTGTACCTCACTACATACATCCCCCTAT
CTTTTTTTTTCCACACATCTCATTATCTTTGCCTCCTGCTTGCTGATGTT
AACCGCATGTGCCATCCTCCTCATTTTAGTTGCCCTTTCACTCCCCACCT
CCCTTTACCTCCCGTATTCTTTCCACCAGCCTTTCTCTTTTGTTGAAAGA
CTTCCCAGCGCTCCTGCTGGCACCCTCCCCTGTCAACACATTTTCCTACT
CCCCCCCGTATTCCGCATTCCTCCGTCCCTTTCCTTCGCACATCCTTCAA
TTTTTCTACGCCTTCCTCCCACCCTTCTGCACCATCCTATCCCCCCATTT
ACCTCAACCTTTTTCCCCCCTCGCTATCCCGCCCCTTCCTCCCACCCTTT
CTTCTCCTTCCTCCTCTCATTTCTTTTCTTATTTCTCCCCCTGTTCTTTT
ATTCTTTCCTCCCTCTTT
NNNNNNNNNNNNNNNNNNCCCCTTTTNNNCCCCCCTTTNCCTTTNACATC
CNNNNNCCTCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGGCCAGCAGT
TCAAGGCTCCTCTCCCAGACCACCCACACCCGAGTACACACACACACACA
CACACAGAGGGAGGTCTGCTTTCTGTCGGCACTCTTTTATTTTCCACAAG
GAAAACCTCGAAGTTCCTTTGTGTGTATCTTATAAAGACAAGACTCTGGT
TTCGCCGCTGCAAATGGGGAGCAAGTGAGCGTGTGGGTTCCTGCTCTCTG
TTCCCCTCAAAGTATATGAATGGCAACCTTTGAGTACTTGAAGCCAGTGT
GGACCCTACCTGTTGGCTCTCTGCAACGGCAAAAGCCAGTCTATGTCTGA
AGACACGGCAAAAGACTGGAGGTAGCCCCTGAGCCTCTCCTTGAGGAGCC
CCATGCCTCTATATCACGCGCCTTCATCTCCCTTTGGGCTTAACAAAGGT
GCAGGCAGAACTGCTCCGAGGGTTCCTCGTTAGCAAAGTTCTTTGAACTA
TTTCATTGCCCTTCTTTGACACTAACACTAATTCCTTGCTCCATCACGTC
CCTGAAACTAATAAAACCCCCTTCCATCAAGGAGAAATCTCAAGCGAGAA
CCGGACAACCCACTCTTCGGAACTTTAGTTTATGGGAACCCCTTGCTTCC
ATTCTTGAAGTTTATTGGTTAATAGAATTTCTTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_d09.g1 MSMg01no100_d09.g1 CHROMAT_FILE:
MSMg01no100_d09.g1 PHD_FILE: MSMg01no100_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:00 2005
         (333 letters)



>mm_chr6_82688359_82689091
          Length = 733

 Score =  586 bits (303), Expect = e-172
 Identities = 325/337 (96%), Gaps = 8/337 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgtggccagcagttcaaggctcctctcccagaccacccacacccgagta--------c 52
           |||||||||||||||||||||||||||||||||||||||||||||||||||        |
Sbjct: 193 actgtggccagcagttcaaggctcctctcccagaccacccacacccgagtatacacacac 252

                                                                       
Query: 53  acacacacacacacacacagagggaggtctgctttctgtcggcactcttttattttccac 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acacacacacacacacacagagggaggtctgctttctgtcggcactcttttattttccac 312

                                                                       
Query: 113 aaggaaaacctcgaagttcctttgtgtgtatcttataaagacaagactctggtttcgccg 172
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 313 aaggaaaacctcgaagttcctttgtgtgtatcttataaagacaagaccctggtttcgccg 372

                                                                       
Query: 173 ctgcaaatggggagcaagtgagcgtgtgggttcctgctctctgttcccctcaaagtatat 232
           |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgcaaatggggagcaagcgagcatgtgggttcctgctctctgttcccctcaaagtatat 432

                                                                       
Query: 233 gaatggcaacctttgagtacttgaagccagtgtggaccctacctgttggctctctgcaac 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaatggcaacctttgagtacttgaagccagtgtggaccctacctgttggctctctgcaac 492

                                                
Query: 293 ggcaaaagccagtctatgtctgaagacacggcaaaag 329
           ||||||||||||||||||||||||||||||| |||||
Sbjct: 493 ggcaaaagccagtctatgtctgaagacacgggaaaag 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)