Query= MSMg01no100_k12.b1 MSMg01no100_k12.b1 CHROMAT_FILE:
MSMg01no100_k12.b1 PHD_FILE: MSMg01no100_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:35 2005
(299 letters)
>mm_chr6_93090629_93091326
Length = 698
Score = 530 bits (274), Expect = e-155
Identities = 280/282 (99%), Gaps = 1/282 (0%)
Strand = Plus / Minus
Query: 18 ccccagtaagtatgcaagtaagggtgttaaaacaggctgctaaggtagttcctctctttg 77
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccccagtaagtatgcaagtaaggatgttaaaacaggctgctaaggtagttcctctctttg 439
Query: 78 atacagtctgtgtcctcctctctgcagagggaactactgaggcttattcataaggaaatg 137
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atacagtctgtgtcctcc-ctctgcagagggaactactgaggcttattcataaggaaatg 380
Query: 138 aatggcgggtcacagagtcatccagagactcatcctctttggcagttgcagaatgctttt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatggcgggtcacagagtcatccagagactcatcctctttggcagttgcagaatgctttt 320
Query: 198 gcctgtttcatgtctgtttggaagcacactcatgaatatatccctatggcacagttcctg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcctgtttcatgtctgtttggaagcacactcatgaatatatccctatggcacagttcctg 260
Query: 258 ggcagagaaagtctttaattacaaaataattataagaccatt 299
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggcagagaaagtctttaattacaaaataattataagaccatt 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space: 199810
Effective search space used: 199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_k12.g1 MSMg01no100_k12.g1 CHROMAT_FILE:
MSMg01no100_k12.g1 PHD_FILE: MSMg01no100_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:35 2005
(460 letters)
>mm_chr6_92935339_92936198
Length = 860
Score = 770 bits (398), Expect = 0.0
Identities = 439/460 (95%), Gaps = 13/460 (2%)
Strand = Plus / Plus
Query: 1 tttcctggtatgagcatatatagaactgaaaattcataaccagggtggtgagaaatttcc 60
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 201 tttcccggtatgagtatatatagaactggaaattcataaccagggtggtgagaaattccc 260
Query: 61 agataccacatatcaactgaccaaggtcacaccgtttaatcgtcagtgagctttagacgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agataccacatatcaactgaccaaggtcacaccgtttaatcgtcagtgagctttagacgt 320
Query: 121 agcatatgtaaaatgaaaataaaaaggttaatctttgttgggcagtagtggttcatgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatatgtaaaatgaaaataaaaaggttaatctttgttgggcagtagtggttcatgcct 380
Query: 181 ttaatcccagtgctcaggaggcagaggcaggggaatctctgagttcgaggccagcctggg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatcccagtgctcaggaggcagaggcaggggaatctctgagttcgaggccagcctggt 440
Query: 241 ctacagaatgatttccagggtggccaggacaacacagagaaactctgtctcaaaaaacca 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagaatgagttccagggtggccaggacaacacagagaaactctgtctcaaaaaacca 500
Query: 301 aaataataataataataataataataataataataataataatcttcactgttgtaccaa 360
||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataataa--at-----------taataataataataataatcttcactgttgtaccaa 547
Query: 361 gtgagctaaatagaaaaagtcaataatcaccaaatggaaaggtaaatgtctaagtgcatg 420
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 548 gtgagctaaatagaagaagtcaataaacaccaaatggaaaggtaaatgtctaagtgcatg 607
Query: 421 ggatccataaggtatagatcagcagctaacacttactata 460
||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ggatccataaggtatagatcagcagctaacacttactata 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
