BAC Information

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BAC

Clone NameMSMg01-100M07
Chromosome6 (Build37)
Map Location 52,816,846 - 52,817,084
singlet/doubletsinglet
Overlap geneJazf1
Upstream geneSkap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13, Evx1, EG666487, 1700094M24Rik, EG545841, Hibadh, Tax1bp1
Downstream geneLOC666259, LOC666516, D430007I03, Creb5, LOC384386, 1200009O22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100M07.T7 (MSMg01no100_m07.b1)MSMg01-100M07.TJ (MSMg01no100_m07.g1)
ACCAG316373AG316374
length683679
length of high quality
(start - end)
75 (146 - 220)240 (48 - 287)
definitionCHROMAT_FILE: MSMg01no100_m07.b1 PHD_FILE: MSMg01no100_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:45 2005CHROMAT_FILE: MSMg01no100_m07.g1 PHD_FILE: MSMg01no100_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGGTTTGACTTTGAGCCGCGGAANTCACGATTGATTCATTGCCTTGC
GGAGAGCCTGTCTCAAAGTAATCTGGGCCTGGTGGTGTTTGCCCGCAGTC
CCAGCACCTTGGATAGAGAGGCAGGAAAATCATGAGATCGGGGGCAACTT
GAGCCATCCCAGACTTCCCTGTAAGATCCTGTCTCAGAAACATGAATTAA
TTAGCCAGATCTACTGGCTGGTTTTGGGTGTCAACTTGACACAGGCTGGA
GTTATCACAGAGAAAGGAGCTTCAGTCCGGGAAGCGCTCCCATGAGTTCC
ATCTGGGGGGCATTTTCTCAATGAGTGATTTTTTTTTCCCCCCCGCCCGA
GGGGGCATTGTTTATGGTATCATTTTTGCCACGCCCCCCCCGCAAACAAG
AAAAGAGAAGGCTGACCCCGTCTGGGGAACGAAGAGAGACCGAAACTGGC
CGCCCTGGCCGCTGGCACAGGTCCTGCTCCCCCCGTTCCCCGAGTCCCCA
TCCCGATCCTTCCCCGCGTGCTACCTTTTTTTTGCCCGCCTCCGACTCCC
TGCCCCTTCCCACCCCCCCGTAGATCCTCGGCCATCGCCCTCCCAGGACG
ACTCCCTACTCTCCACTTCCCCCCGCTCCCCTTTCTTTTTTTTTCTTTTT
AAGCCCCCCCCCCGCGCCTCCCCCCCCCCCCTC
GCCTGTTCGAACACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTG
TATTCCCTGGACAATATAGAATTCAAGTTTTGTTGACCGTGTTTGGCTCA
GGTTAGAATGGTCTTGTTAATACTATACTTTTTCAGTAGGATGAAGTGTC
CAACTGCTGGGGCAGTGTCATACCAAGCCAGTTCTAACCTAAGTGTTACC
TAAAGGCCTCACAGGCTGACAGCACTTTTTCACAGATGGTCTTCCATTGT
TGTATTCTTGTCACATAGGTTGAGCCACTGGACAGTTCTTGATAAGGGGT
AGCATTCTAAGAAGGCGCAAACATGTCTCAGAACACCACACCAGCATATT
TACCCATTCCAATGCGCACGTCCAGCTTCAAAGTGCCACTCTTGAGCCTG
GATGATAACCTCAGTAGTTCTGCAAAGAAAAAGGAGAGCCTGACACCATA
GATCCCTGCTGCCCAGCCCATTTCAAGCTGTTTCGGCACGGCTAACTCAG
TGTCTAGATTCTCACAGGAACCGTGGAAGCCCCCTTCTTTGAACCCGTAT
CAAGAGGTGGTTTTACTGCCTACACCATCCGTGTCTCATCCCAAAGGCCC
AACCTTCGTGTCTTATTTTTTTCCATCATCCACGCCCCTCCCTCCCAATC
TTAGAATCATATCTGCCGTCCTACTCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_m07.g1 MSMg01no100_m07.g1 CHROMAT_FILE:
MSMg01no100_m07.g1 PHD_FILE: MSMg01no100_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:45 2005
         (240 letters)



>mm_chr6_52816645_52817284
          Length = 640

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgtattccctggacaatatagaattcaagttttgttgaccgtgtttggctcaggttagaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtattccctggacaatatagaattcaagttttgttgaccgtgtttggctcaggttagaa 381

                                                                       
Query: 62  tggtcttgttaatactatactttttcagtaggatgaagtgtccaactgctggggcagtgt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggtcttgttaatactatactttttcagtaggatgaagtgtccaactgctggggcagtgt 321

                                                                       
Query: 122 cataccaagccagttctaacctaagtgttacctaaaggcctcacaggctgacagcacttt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cataccaagccagttctaacctaagtgttacctaaaggcctcacaggctgacagcacttt 261

                                                                      
Query: 182 ttcacagatggtcttccattgttgtattcttgtcacataggttgagccactggacagtt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttcacagatggtcttccattgttgtattcttgtcacataggttgagccactggacagtt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)