BAC Information

Click to search

BAC

Clone NameMSMg01-100N12
Chromosome6 (Build37)
Map Location 33,391,189 - 33,528,383
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N12.T7 (MSMg01no100_n12.b1)MSMg01-100N12.TJ (MSMg01no100_n12.g1)
ACCAG316427AG316428
length700737
length of high quality
(start - end)
236 (51 - 286)194 (101 - 294)
definitionCHROMAT_FILE: MSMg01no100_n12.b1 PHD_FILE: MSMg01no100_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:51 2005CHROMAT_FILE: MSMg01no100_n12.g1 PHD_FILE: MSMg01no100_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,391,189 - 33,391,424)(33,528,190 - 33,528,383)
sequence
AACTCCTATTCCGAGAGGATCCGCGGAATTCTTTTGTCTCCCTTCTTGGC
TTTGAAAATCTCAGCTATGAAATGGAATCTGTTACTCATGAAAGGATTTG
CTATTTGATATAGTCATCATTTTACTTGGTTTTATTTATACCTGAGAGCT
ATTTTTATGACTGATTTGTTTTGTGCTCTTTGTTTTAGCTTTTGGCGACC
CATTCTGTACCATACATAAGTCTGTTTCCTATGTTTCTGACCTTTGCAAA
CAATTCCTGGAGAATACTTAAATGGTGCTATAGGGCAGGCGAAATCTATC
AGCCATTTGGAAAACATCATTTTAGACATTTAGATAGAGACCAGTGACGC
CTTGCTTCTTTGATATCCGTGGTCTTTTTTAGTATCCTCTGTGCATTAAT
CTTTTACTTCATCAGTTCACGAAGAAAACTGCCTCTGAACAGCCCTTATG
TCTGCTGACGCAGTGGTTAGCGCGCGATGGGTTTTGATTTCAGTAATACC
ATAATTGGAATGATTTTGTAAGCTACTCTTGTCGCTGTATATGTGGTCCT
GCCCTAACATGATGCTGACCTCCACACCGATGATGATCTCAAGGTAACTC
GGAATTGACGAAGTCTTATCACCACTAGCCCGGATTTTATTTATAACCCC
CGGCATGTGCCACCTTTTTTGTACAGCCAATATGTCCCACTTGTTCTTCC

GGCGGCGCCTTTTCTCATCGGGGAGGTGACCTATAGAATTTCAGAACAAG
TCTTTTGATTGGATAAATTGGGAAGGGGTGGGGCGGGGGGTCGGAGGCGG
GAATCAGGGCATACGGAGCCTGGTAAGCACCCTATTCCTTGAAAAGCCAC
AATGTCTACAGGTGGTAAATGTAGTTTGGTTTATGTTGATATGGCTCTGG
ATGGAGTTCAAGGACAGAATAATTACAGATCTTGCGCAAGACCCATGGCT
CAATACTAAATACAGGGAGGGAGCAGCAACGTTTATCTATAAATGACTCG
NTTTAGAAAGAAACAAAGAAAGGAAGGAAGGAATTTTTTTTTCCACCCCC
CCCCCCCCGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATAA
AAAAAAAAAATTAATTAGGCGGGCCCGCGCTTCCGTTAATCCTCCCCTCT
TTCGCCCTTTAATCTGATTTATTTAATATCAACTTAATGTTTTTATTTTT
ATTTTATCAATTTTTTTTCTTCTTCCTACTTTTTTCTCTTTCCCATTATA
TTATCTGCTCACCTCAACCTCTTCCCTCTCTCCCCTTTATCTTCCACCAT
TATCCACTTTCTCCCTTATTTTTTTATTTTTTCTCTTTTTAACCCCTCTT
ACCTCTCTTTTTTTTCTTTTTTCAATTTTTACTCACTTCCCCCCTTCCAA
ACTTTTTTTTTTTTTCTCCGCCCTTCTTTTCCACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n12.b1 MSMg01no100_n12.b1 CHROMAT_FILE:
MSMg01no100_n12.b1 PHD_FILE: MSMg01no100_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:51 2005
         (236 letters)



>mm_chr6_33390989_33391624
          Length = 636

 Score =  410 bits (212), Expect = e-119
 Identities = 230/236 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgaaaatctcagctatgaaatggaatctgttactcatgaaaggatttgctatttgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgaaaatctcagctatgaaatggaatctgttactcatgaaaggatttgctatttgata 260

                                                                       
Query: 61  tagtcatcattttacttggttttatttatacctgagagctatttttatgactgatttgtt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tagtcatcattttacttggttttatttatacctgaaagctatttttatgactgatttgtt 320

                                                                       
Query: 121 ttgtgctctttgttttagcttttggcgacccattctgtaccatacataagtctgtttcct 180
           ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgttccttgttttagcttttggagacccattctgtaccatacataagtctgtttcct 380

                                                                   
Query: 181 atgtttctgacctttgcaaacaattcctggagaatacttaaatggtgctatagggc 236
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 atgtttctgacctttgtaaacaattcctggagaatacttaaatggtgctacagggc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no100_n12.g1 MSMg01no100_n12.g1 CHROMAT_FILE:
MSMg01no100_n12.g1 PHD_FILE: MSMg01no100_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:51 2005
         (194 letters)



>mm_chr6_33527990_33528583
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 190/194 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatcagggcatacggagcctggtaagcaccctattccttgaaaagccacaatgtctaca 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 394 gaatcagggcatacggagcctggtaagcaccgtattccttgaaaagccacaatgtctaca 335

                                                                       
Query: 61  ggtggtaaatgtagtttggtttatgttgatatggctctggatggagttcaaggacagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 334 ggtggtaaatgtagtttggtttatgttgatatggctctggatggagttcaaggacaggat 275

                                                                       
Query: 121 aattacagatcttgcgcaagacccatggctcaatactaaatacagggagggagcagcaac 180
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 274 aattacagatcatgcgcaagacccatggttcaatactaaatacagggagggagcagcaac 215

                         
Query: 181 gtttatctataaat 194
           ||||||||||||||
Sbjct: 214 gtttatctataaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)