BAC Information

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BAC

Clone NameMSMg01-101F05
Chromosome6 (Build37)
Map Location 48,427,363 - 48,427,595
singlet/doubletsinglet
Overlap geneSspo
Upstream geneCul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467
Downstream geneEG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F05.T7 (MSMg01no101_f05.b1)MSMg01-101F05.TJ (MSMg01no101_f05.g1)
ACCAG316767AG316768
length855731
length of high quality
(start - end)
97 (125 - 221)233 (77 - 309)
definitionCHROMAT_FILE: MSMg01no101_f05.b1 PHD_FILE: MSMg01no101_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:29 2005CHROMAT_FILE: MSMg01no101_f05.g1 PHD_FILE: MSMg01no101_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTCTTTCTTTNCTTCCTTTATAT
ATATTCTATAATTGCGGCGCTAAACGACTCACTATTTCGAGAAGAGCGCG
GATTCTGTGGTGTTTCAAAAAGATTGTATGCACGGTCATGCTCTACTCTG
CTTCCTAACACTGTGTGGGTGCTATGTTCCTCTCCTCCCTCTCCATCCCC
ATAAGAGGTTGTCTGTTTTGACTTTTCTAATAAGTAGATTTAATGTATTC
TGTAACTCATTATTTTTATTGCAACTTTTCTGATTCTATTTTAATATCTT
AATTTATTTTTTCCAATGATTGGAAATATATAACTTGCCCAATGCCGACA
GATCTGCTTCTTAACTATACTTTTTTTTTCCTTTTGTTAATATTTATTTG
ATTCCTCGCATGCTTGTTTTACTCCTTTGCTACATTATCAATTAATTTTT
TACTTTAATCTACATTTAATTCTATTTAATTGTTATCATATCTTGCTCTC
ATTATTTGTTATTTTTCATCCGATTCTTTTATTATTATACTGAGCGCCAT
AACAATTTTAATTACGATTAAGCATTACGAAATTATAATATAATATACTA
CCACTTACCATTCTTATCCTTATTCTACTACACCAAGCCTCTATTCTAAT
AAACTACATGTCTGTTATTCTACTGCACTCCTTATCCCTATTATCCGACC
TCTTTACCACACTCTCATATCAAATCACACGAATTTTCTTTCTCTTAATT
TTAATTCTTAATCTTATTTAATTATTAATTCCATATTAAATTCTATATTC
TCCTCTTCTTCTCTTCTTTTAAACTTACTCACTATTTTAAGTATTATGTT
AGATA
AAAACGATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGCACTCACGCACTCACAGCACG
CACTCCGTCCCCAGCATCACAGAGCCCACTGGATTTGGAGAGGGAGGTCT
GAGAGTCTAAGCCACAGCTTTTACTTAATGTTATATAGTTTGTGGCCCAG
CTCCCTGTTCCTTGAGGCAGGTATCCAGTGCTTCAAGGGCAGGGCTGGGT
GGACTGGTTTAGAGCTCACTGAACCATCTCTTGGTAGCACCTGCATCTCT
GGAGAAATGGTGCGCACCTCATATCTCTTGTCCAGGTACTCCCTTCATGT
GGTGGTCAGCGTTGATACTATGCCATTTTAGACCCTTCTGAGATAACCTC
TTACCGTGTTGGATATGTCCCAGTAAATTCTGGTCCCTATACTGCTTGCC
CTGTTACTCAGACATCTGCCCTTTCTCCCTGCCATTTGTTCAGAGGTCGT
AGCCCCTGGCATTCATGCAATTCCTTGCATTCAATTCTTGTATTGTGTCT
CTTTCCACCTCTTCTTTATATTCGTTTCCTTATCTCGCTCTGATCGCTTT
CTGCTCTCTTTCTATTGTTCTCGTTCCTCCTTTTCTCCTCCTTTATTCAT
CTTCATCTTCTGTCTCTTCCTTCATCCCTTTATTGTCCATCCTCTTATTC
CTTATCTTCCTCTCGGCTCCCTATTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f05.g1 MSMg01no101_f05.g1 CHROMAT_FILE:
MSMg01no101_f05.g1 PHD_FILE: MSMg01no101_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:29 2005
         (233 letters)



>mm_chr6_48427163_48427795
          Length = 633

 Score =  427 bits (221), Expect = e-124
 Identities = 230/233 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgcactcacgcactcacagcacgcactccgtccccagcatcacagagcccactggattt 60
           |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 acgcactcacgcactcacggcacgcactccatccccagcatcacagagcccactggattt 260

                                                                       
Query: 61  ggagagggaggtctgagagtctaagccacagcttttacttaatgttatatagtttgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagagggaggtctgagagtctaagccacagcttttacttaatgttatatagtttgtggc 320

                                                                       
Query: 121 ccagctccctgttccttgaggcaggtatccagtgcttcaagggcagggctgggtggactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagctccctgttccttgaggcaggtatccagtgcttcaagggcagggctgggtggactg 380

                                                                
Query: 181 gtttagagctcactgaaccatctcttggtagcacctgcatctctggagaaatg 233
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gtttagagctcactgaaccatctcttggcagcacctgcatctctggagaaatg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)