BAC Information

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BAC

Clone NameMSMg01-101L15
Chromosome6 (Build37)
Map Location 119,452,627 - 119,452,885
singlet/doubletsinglet
Overlap genenone
Upstream geneAnkrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14
Downstream geneErc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101L15.T7 (MSMg01no101_l15.b1)MSMg01-101L15.TJ (MSMg01no101_l15.g1)
ACCAG317064AG317065
length1,064740
length of high quality
(start - end)
---251 (72 - 322)
definitionCHROMAT_FILE: MSMg01no101_l15.b1 PHD_FILE: MSMg01no101_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:03 2005CHROMAT_FILE: MSMg01no101_l15.g1 PHD_FILE: MSMg01no101_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTTTTTTTTTNNNNNNNTTTTTTTTTCCNTCCTTTTCCCCCTATA
TTCTTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAG
AAAAGCGCGCGGAATTCAATCCTTTTTTCCCCACAATGGATAAAGGAGAG
TAACCTATCTCCTGTCAGGATGTTCCTTCTGCACTTAGGTCTGCATCTGT
GCACATTACATACTTATCTTATTAGAATTTCTATAAATCATATTATTTAT
AACACATGCATAACTAGTATATACTCATCACTTTGTCTCATTTGTCCTCA
TCAAAAATGTAAGCACTCCTCTATCTCGTTTCCACAATATCCACTGGAAT
TGTAACTTCCCCTGAAACTCGTAAAACCACACTACCTCACTCTCAACGAG
TGGTAATATACACTACTAATACACTACATACTCTGAATTATTTTAATATA
CCCAATTCAGGTTCTTGTAGCTAGGACAGACCAGTAGTTTATTTTTATTA
CGCCCCGTCCCACTAACTCTCTTTGTTCTAATCTTGATGATACAAAGATT
TATTACTCATATCTAGTTACATCTACCATATCCTTGTCCACTTCTTTTTA
TATATGTACTTATTTTATCATAGTCCTTTATAATCATGTATGATTTCTAA
ATCGTTTTCACNATAACACAATGAATCTCGTCTATCTAGTCTATACAGTG
AAGCACGACATTAGTTTTATTTATATATCTACATTCTCTTGAAGCGAACC
TTCTACAAACTTCCCGTATAGTGACACCTTCCCACCATCTCTCCACACTC
TACATCTCTCTCGGCACCTCTACTTTACACTGTAACTATCTTCGCGTATT
TAACCGCCACGTCACCACACCACTATCATATATACTCACTCTACTCCCTC
ATATATATACATGATCTATCTTTTATCGAACCCCTACATATATCTTTATT
GTCTACAATACTCGCGTTCTATCTTATTTCTCACATCTTTGTACACTGAA
CATTATTGATATATCAATAACTGCACTTTGAACAATGATTATTTTACACA
TTTTCTTAAATGCA
TGTAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAGGCCTATTATGTAATAAACAGTGTTTTG
ATTTGGTTAAAACATTCCTGCGGATCTGGAGATATGCTCAGTAAAATACC
TGCCATGTAAGTGTAAGAGCCCCAGACCCACATAAAAGGAAAAAAAAAAA
AAAAAGCTGGGCCCAGATAGTCGAAGACAAGGCAGGGGGAACCCTAAAAT
TTCACTTAAAGAGCCCAAAAACAAAGGTGGATAGAAATCATGGAAGGGAA
CCTACTGTTTAACCCCGGCCTCTTTTTTCATGTGCATCTATGTACACATA
CCACACACTAATACTAATTACACCCAAAATTCCTGTGTTTGGACAGGCTC
GTTATTTGCATGAACCAAACCCGAATCAGATTGCACAGGTACCAAAGGAA
GATTTTAGGGTGGAGCAATGTCCTGTATTTTGATTATAGTGGATGACTTT
ACAAGGCATGCTATGGTCTGAAATTAATTTGTCTCCAAAAAAAAAATCGT
ACTGAACCGTGCTCCCTATTGTGAGAGAGCCATTAATATACCTGTTACAG
TTGGTGTGATCTTTGGAAGTTTGGTTCGGTAAGGATCTATCTTATGGAGT
GATAACTGCCAGTCTTAGGGTATTTAGCTTGCTCCCTCCCATGTGATCTC
TAGCATGACTCCAATCCTTGGGTGACAATTTGGTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_l15.g1 MSMg01no101_l15.g1 CHROMAT_FILE:
MSMg01no101_l15.g1 PHD_FILE: MSMg01no101_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:03 2005
         (251 letters)



>mm_chr6_119452435_119453085
          Length = 651

 Score =  451 bits (233), Expect = e-131
 Identities = 249/259 (96%), Gaps = 8/259 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcctattatgtaataaacagtgttttgatttggttaaaacattcctgcggatctggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 193 aggcctattatgtaataaacagtgttttgatttggttaaaacattcctgtggatctggag 252

                                                                       
Query: 61  atatgctcagtaaaatacctgccatgtaagtgtaagagccccagacccacataaaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atatgctcagtaaaatacctgccatgtaagtgtaagagccccagacccacataaaaggaa 312

                                                                       
Query: 121 aaaaaaaaaaaaaa--------gctgggcccagatagtcgaagacaaggcagggggaacc 172
           ||||||||||||||        ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaaaaaaaaaaaaaaaaaaaaagctgggcccagatagtcgaagacaaggcagggggaacc 372

                                                                       
Query: 173 ctaaaatttcacttaaagagcccaaaaacaaaggtggatagaaatcatggaagggaacct 232
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 373 ctaaaatttcacttaaagagcccaaaaacaaaggtggagagaaatcatggaagggaacct 432

                              
Query: 233 actgtttaaccccggcctc 251
           |||||||||||||||||||
Sbjct: 433 actgtttaaccccggcctc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)