Query= MSMg01no101_l20.b1 MSMg01no101_l20.b1 CHROMAT_FILE:
MSMg01no101_l20.b1 PHD_FILE: MSMg01no101_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:04 2005
(625 letters)
>mm_chr6_55438445_55439469
Length = 1025
Score = 1081 bits (559), Expect = 0.0
Identities = 607/627 (96%), Gaps = 8/627 (1%)
Strand = Plus / Plus
Query: 3 gaattcctagggtcttacca----ggagaagatgggaatgctctctgcacaggcaagggc 58
|||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctagggtc----caaggtggagaagatgggaatgctctctgcacaggcaagggc 258
Query: 59 agtgtctgcctactctcctatagggtgtttcctggggctgcagtccagccaggtctttac 118
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 agtgtctgtatactctcctataggatgtttcctggggctgcagtccagccaggtctttac 318
Query: 119 ataaaaggctctgtagaaaccgtgtgccaaatcactgggaatagacgtgagagccgagac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ataaaaggctctgtagaaaccgtgtgccaaatcactgggaatagacgtgagagccgagac 378
Query: 179 cctggaataaatagccttgaccttcttgcagatgaagagaagccatgccagagctgggtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctggaataaatagccttgaccttcttgcagatgaagagaagccatgccagagctgggtg 438
Query: 239 ggcctggaagctgaggctccctcatcttcagatggggctctgcttcagccactagccaaa 298
|||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||
Sbjct: 439 ggcctggaagctgaggctccctcatcttcagatgagcctctgcgtcagccactagccaaa 498
Query: 299 ttcccacaggccagcaactcccaccgaccagcagaggtctctgtcttgagtctcccgtgc 358
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 499 ttcccacaggccagcaactcccactgaccagcagaggtctctgtcttgagtctcccatgc 558
Query: 359 ttccttggactcagggtggccctccaggctgacctaggtgatctctaggtgacaccgtgc 418
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 559 ttccttggactcagggtggccctccaggctgacctacgtgatctctaggtgacaccgtgc 618
Query: 419 tcccttcttgcttagttgtcctgcgagttccatgctcgcctttcccacgctccaggtcag 478
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 619 tcccttcttgcttagttgtccttcgagttccatgctcacctttcccacgctccaggtcag 678
Query: 479 ctcttctgcccctgcgcatcttgttgcttgtcagcgagtctgtttgtaagtcactgcagg 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctcttctgcccctgggcatcttgttgcttgtcagcgagtctgtttgtaagtcactgcagg 738
Query: 539 ccagggtcagggtcttgggagagggcctcttcccctctttctctggagacagtctcccct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccagggtcagggtcttgggagagggcctcttcccctctttctctggagacagtctcccct 798
Query: 599 gagatccctctggatgtcacccttgct 625
|||||||||||||||||||||||||||
Sbjct: 799 gagatccctctggatgtcacccttgct 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_l20.g1 MSMg01no101_l20.g1 CHROMAT_FILE:
MSMg01no101_l20.g1 PHD_FILE: MSMg01no101_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:04 2005
(435 letters)
>mm_chr6_55519419_55520253
Length = 835
Score = 777 bits (402), Expect = 0.0
Identities = 426/434 (98%)
Strand = Plus / Minus
Query: 2 ttctttaaaacaaatacagaaaatagacatatttccatatattataattgaagaaatttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttctttaaaacaaatacagaaaatagacatatttccatatattataattgaagaaatttt 576
Query: 62 ttcattatttccctttgtggagagagagccagtgaccaggaaaaattgaaaatctgagtt 121
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 575 ttcattatttccctttgtggagaaagagccagtgaccaggaaaaattgaaaatcagagtt 516
Query: 122 gtttcaagtcatctcataacctttgacccaaaggcttctgtgtgtctaccttccagatca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtttcaagtcatctcataacctttgacccaaaggcttctgtgtgtctaccttccagatca 456
Query: 182 gacttgaagagctgccctatctggcagttcaggaccagtagctcatagggtgagatggag 241
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 455 gacttgaagagctgccctatctggcagttcaggaccagtaactcatagggtgagatggag 396
Query: 242 ttctacacacacaatcttatatctagtcgtgctatattttaaaaactgtaaatcatggaa 301
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttctacacacacaaccagaaatctagtcgtgctatattttaaaaactgtaaatcatggaa 336
Query: 302 ccaagggaaacaagcccccagacacatttgccaaggctcaattataaaactgcattggtt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccaagggaaacaagcccccagacacatttgccaaggctcaattataaaactgcattggtt 276
Query: 362 tgattaaaggggtcctaaagagttaactctttcctcatcccatgtgggtaaaagtagttt 421
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 275 tgattaaaggggtcctaaagagttaactctttcctcatcccatgtgagtaaaagtagttt 216
Query: 422 cctcaatgattact 435
||||||||||||||
Sbjct: 215 cctcaatgattact 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
