BAC Information

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BAC

Clone NameMSMg01-102A07
Chromosome6 (Build37)
Map Location 106,389,983 - 106,533,949
singlet/doubletdoublet
Overlap geneCntn4
Upstream geneLOC100043716, LOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A07.T7 (MSMg01no102_a07.b1)MSMg01-102A07.TJ (MSMg01no102_a07.g1)
ACCAG317277AG317278
length735695
length of high quality
(start - end)
249 (86 - 334)522 (72 - 593)
definitionCHROMAT_FILE: MSMg01no102_a07.b1 PHD_FILE: MSMg01no102_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:28 2005CHROMAT_FILE: MSMg01no102_a07.g1 PHD_FILE: MSMg01no102_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,389,983 - 106,390,231)(106,533,536 - 106,533,949)
sequence
NTTATTAAAATGNGCATCTAAAATTGCGGCCGCTNTACGACTCCTATTCG
GAGAGGATCCGCGGAATTCTTTTTCTTACAATGAAAGTGCTAAACTTACA
GACGCAAGGGCTATTTCTGGTTCTGATTCAAATCACGATCTTAAATTGCG
CAAATATTTTGAAATCCCCAAGCCTCACTCTTCCTGTCTTGTAAGAGAAG
AACTTACAACAAATCTCTCAGATCCCTTTTAGTCACATTATACCATAATT
ATAACTCAATAAACGCTAATGAATGTCTTTATTAAGTGTTTTTACATTGT
TGGGGCCTATCCTTTTTTAAAGAAACCATTAATATCTACATGTATTTTGA
TTCTGGTGACATTTGTTCAGACTTGCACTCCTAACTATGTAATCTGATTA
AAATAAAGATGGGGAGTTTTGCTAATTTTTATATGAGCACCTTGACAGTA
TTAAGCTTCAGAAACCTGACCGCGACTCCAAGGATTCCTCTTAGAGGGGT
ATCCTCAGCGTACTCCCCTTCCCTGGTGTAATGGTACCAGTGACAAGGAC
ACCACATGATGCAGTAGAGCGAGACTCGCTCTGTTGTAGATCATGTGTTT
ATCTTCCTCCCTCTTTTCACAGATACAAGCTTTAATTCGTCTTTCCTACT
CCACTGTTCTACGTCCGTCCTCTTTGCACCCTCCCACCTTTCCCCGTAAT
CTCCTTCTTCGTCTCTTTTCGACATCCTCCGCAGT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGGTTGGAAATACAAACTTGGATGTTCT
AAAGATTTACAAATGTTAGAAATTGATGGACCCAGTGAAGGTATCCAAGA
AGAAGGGCCATGAAAAGATGAAATGCAGCCCTGATTTAGTTCAGAGGTTA
TGGAAAGGGGAATCATACAATAGACATATTGGAAAGTAGCTAGTGTCCAG
GGCTGCGATAGGGGAACATAGGAGAAGGAAAACCAGACAAGTAAAGGGTC
CTGGATAGCAAGTGGGATATGAGAAGCAGGAAGTGGTCCACTCCGTCTGT
CAAACATTATTCAAAGGCCAGGAGCCAAAAGTGGTCATTCGCCTTGATAA
CCCAGCGATAGTTAAACGTATCAAGAATGGGTTAGGACAATGGAAGAAAG
GGTTGACGGATGGTTAGGGAAATGGAGATATGGTAGAACCATTCACAGCA
GTGGATATATAGTAGGTACATAGAGGATACGTTTTAGGAAGATCAACCTG
GTGAAATAAAATCTGAACAAGTAGAGTTTAAGATAACATGGTTTGCCTGG
CATAGGGAATGGACTACAGATAATTCTATTGATCATTTTCAAGATGATTT
CATTATCATTCATGGGCTTCAATCTCTGTACAGGCAAAATGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a07.b1 MSMg01no102_a07.b1 CHROMAT_FILE:
MSMg01no102_a07.b1 PHD_FILE: MSMg01no102_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:28 2005
         (249 letters)



>mm_chr6_106389783_106390431
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgctaaacttacagacgcaagggctatttctggttctgattcaaatcacgatcttaaa 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 agtgctaaacttacagacgcaagggctattcctggttctgattcaaatcacgatcttaaa 260

                                                                       
Query: 61  ttgcgcaaatattttgaaatccccaagcctcactcttcctgtcttgtaagagaagaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgcgcaaatattttgaaatccccaagcctcactcttcctgtcttgtaagagaagaactt 320

                                                                       
Query: 121 acaacaaatctctcagatcccttttagtcacattataccataattataactcaataaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaacaaatctctcagatcccttttagtcacattataccataattataactcaataaacg 380

                                                                       
Query: 181 ctaatgaatgtctttattaagtgtttttacattgttggggcctatccttttttaaagaaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ctaatgaatgtctttattaagtgtttttacattgttggggcctatcattttttaaagaaa 440

                    
Query: 241 ccattaata 249
           |||||||||
Sbjct: 441 ccattaata 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_a07.g1 MSMg01no102_a07.g1 CHROMAT_FILE:
MSMg01no102_a07.g1 PHD_FILE: MSMg01no102_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:28 2005
         (522 letters)



>mm_chr6_106533035_106533956
          Length = 922

 Score =  739 bits (382), Expect = 0.0
 Identities = 406/414 (98%)
 Strand = Plus / Minus

                                                                       
Query: 109 cctgatttagttcagaggttatggaaaggggaatcatacaatagacatattggaaagtag 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 cctgatttagttcagaggttatggaaaggggaatcatacaatagacatattggaaagtag 856

                                                                       
Query: 169 ctagtgtccagggctgcgataggggaacataggagaaggaaaaccagacaagtaaagggt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ctagtgtccagggctgcgataggggaacataggagaaggaaaaccagacaagtaaagggt 796

                                                                       
Query: 229 cctggatagcaagtgggatatgagaagcaggaagtggtccactccgtctgtcaaacatta 288
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 795 cctggatagcaagtgggatatgagaagcaggaagtggtccactctgtctgtcaaacatta 736

                                                                       
Query: 289 ttcaaaggccaggagccaaaagtggtcattcgccttgataacccagcgatagttaaacgt 348
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 735 ttcaaaggccaggagccaaaagtggtcattcgccttgataacccagtgatagttaaactt 676

                                                                       
Query: 349 atcaagaatgggttaggacaatggaagaaagggttgacggatggttagggaaatggagat 408
           | |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 675 accaagaatgggttaggacaatggcagaaagggttgatggatggttagggaaatggagat 616

                                                                       
Query: 409 atggtagaaccattcacagcagtggatatatagtaggtacatagaggatacgttttagga 468
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 atagtagaaccattcacagcagtggatatatagtaggtacatagaggatacgttttagga 556

                                                                 
Query: 469 agatcaacctggtgaaataaaatctgaacaagtagagtttaagataacatggtt 522
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 555 agatcaacctggtgaaataaaatctgaacaagtagagtttaagataacgtggtt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)