BAC Information

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BAC

Clone NameMSMg01-102D10
Chromosome6 (Build37)
Map Location 114,237,410 - 114,389,706
singlet/doubletdoublet
Overlap geneSlc6a1, Hrh1
Upstream geneCpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
Downstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102D10.T7 (MSMg01no102_d10.b1)MSMg01-102D10.TJ (MSMg01no102_d10.g1)
ACCAG317421AG317422
length770725
length of high quality
(start - end)
245 (125 - 369)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no102_d10.b1 PHD_FILE: MSMg01no102_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:44 2005CHROMAT_FILE: MSMg01no102_d10.g1 PHD_FILE: MSMg01no102_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,389,462 - 114,389,706)(114,237,410 - 114,237,652)
sequence
NNNNNNNNNNNNNNNNNCCCCCCCCCCNCCCCCCCNNNCCCCATTTATCN
NNNCTCTCAAAATTTGCGGCGCTAATAGACTCCTTTTCGTACTGGACCGC
GGAATTCAACTGTTCCGAAAAAGAAATGTGGAAGAGCTTGATGTGTGCTA
GAGATGCCCCAGAATGCTGTCAGTTCTGGGGTGACATCTGTGAGACATCG
GAGTGCAAATAGAAAAGCTGGGTGTTAGGCAGCACACTCAGAAGGCCCAG
ATGGGAACAGGGACTCTAGAGCTGACCTTAAGTCTCTGAACAGATTTTCA
ATTTTGGATGTTTTTTAAAAGAATTGTTTATTTTTATTTTATGTAGGAAG
ATGTTTTGCCTACAGGTATGTTTGTGAAGCATGTGCATTCACACCCACAG
AGGCCAAAAGATGTTACTGGATCCCCTGGAACTGGAATTACAGACAGTCG
TGAGCTATAATGAGGTGCTGGGAATTAAGCCTGGGTTCTCCAGAATTGCA
GCAAGGGCTCCTCGGAGCAACCTCTCCAGGTCCCTGAATTTTCAAATGTT
GAACAGTGTTGATACTTGGGGTACTCTAAGTTGACCTGAATGCATTCTGC
GAGATTTTATGCCCATGAGCTCCTGAAGTGGCCAGAGTGGAATGTGACAG
TTTGAATCTGATATGTTCCCACAAGTCCAGGTTCTGGAAGGCCTATCTTC
TTACTATTTTGGGAAGCCACTTTCTTGTACGAGGTTGTGGAATCCCCAGA
CGGCATCGGCCTATTATGTT
NCGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTGAAATTCTCATTCCTCTAAGATGTAGAATTTCTG
TCTTCAAAGCATTTTCTTTATTGCACCAGATGCTCCGAAGACAGGATTAC
CTTTACTGTCTTTTGGGGAAACTGAGGCTCAGAGTGCTCTGATCTGTCCC
CTGGCTTCCCAGCCAATGTTGGTCCCCTTTACTGAGCTATTTCTTCCTGA
GAAGGAGCCTGGGAATCACCGTGCTGGCAGGAAAGGAGCCCACAGCACCT
GGAATCTAAGGTGGCTGATGTATTTATTTGGGCTTGTCCAGAGGCTGCAG
AGGGAAGAGCTCTTCCTGCCCCCCCCCCCCCTGAGCCTTACCTGGGCTCT
GGCCAGAACTTGTCATAATCTAGGTCAAGACCTGAGTTTATGGTTCAAAA
GTATGATCCCTTGATCCCATCAGTTTCCAGACACTGATTAATGGGAGATG
CTGTGCTTTCTAACAGACTTGTATGACACAGGTATGTTCATCTGAATGAA
CTGGGGTGACATGTACTACCCTTCTATCTTTTGTGAGGTTATTATAGGTC
ACCTGTGGTCTTAGGAGTCCCCAAAGATGTTAATACACGTTCCTATGTGC
ACCTTGTCCCTCCAGTCTCCCTGTCGTAACATCTCGTACCTGCCAGCTTG
CTCCGCCCCCCGTCGCTCCCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_d10.b1 MSMg01no102_d10.b1 CHROMAT_FILE:
MSMg01no102_d10.b1 PHD_FILE: MSMg01no102_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:44 2005
         (245 letters)



>mm_chr6_114389118_114389762
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgtggaagagcttgatgtgtgctagagatgccccagaatgctgtcagttctggggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 589 aatgtggaagagcttgatgtgtgctagagatgccccagaatgctgtcagctctggggtga 530

                                                                       
Query: 61  catctgtgagacatcggagtgcaaatagaaaagctgggtgttaggcagcacactcagaag 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 catctgtgagacatcagagtgcaaatagaaaagctgggtgttaggcagcacactcagaag 470

                                                                       
Query: 121 gcccagatgggaacagggactctagagctgaccttaagtctctgaacagattttcaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 469 gcccagatgggaacagggactctagagctgaccttaagtctctgaacagatattcaattt 410

                                                                       
Query: 181 tggatgttttttaaaagaattgtttatttttattttatgtaggaagatgttttgcctaca 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tggatattttttaaaagaattgtttatttttattttatgtaggaagatgttttgcctaca 350

                
Query: 241 ggtat 245
           |||||
Sbjct: 349 ggtat 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_d10.g1 MSMg01no102_d10.g1 CHROMAT_FILE:
MSMg01no102_d10.g1 PHD_FILE: MSMg01no102_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:44 2005
         (243 letters)



>mm_chr6_114237210_114237852
          Length = 643

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattcctctaagatgtagaatttctgtcttcaaagcattttctttattgcaccagatgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tcattcctctaagatgtagaatttctgtcttcaaagcattttctttattgaaccagatgc 260

                                                                       
Query: 61  tccgaagacaggattacctttactgtcttttggggaaactgaggctcagagtgctctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccgaagacaggattacctttactgtcttttggggaaactgaggctcagagtgctctgat 320

                                                                       
Query: 121 ctgtcccctggcttcccagccaatgttggtcccctttactgagctatttcttcctgagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtcccctggcttcccagccaatgttggtcccctttactgagctatttcttcctgagaa 380

                                                                       
Query: 181 ggagcctgggaatcaccgtgctggcaggaaaggagcccacagcacctggaatctaaggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcctgggaatcaccgtgctggcaggaaaggagcccacagcacctggaatctaaggtg 440

              
Query: 241 gct 243
           |||
Sbjct: 441 gct 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)