BAC Information

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BAC

Clone NameMSMg01-102E20
Chromosome6 (Build37)
Map Location 92,742,634 - 92,742,851
singlet/doubletsinglet
Overlap genenone
Upstream geneGrip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866
Downstream geneA730049H05Rik, LOC384461, LOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102E20.T7 (MSMg01no102_e20.b1)MSMg01-102E20.TJ (MSMg01no102_e20.g1)
ACCAG317485AG317486
length734719
length of high quality
(start - end)
283 (70 - 352)82 (167 - 248)
definitionCHROMAT_FILE: MSMg01no102_e20.b1 PHD_FILE: MSMg01no102_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:51 2005CHROMAT_FILE: MSMg01no102_e20.g1 PHD_FILE: MSMg01no102_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACAGGGCGGAATTCCAA
CAAGTTTGCAAACCTAGTGAGTTAGACCTTACCTCAAAAGAGCTTCATGC
ACAAGACCACGGACTCACTCCCCAACACCTACCCAAACAAACAAAGAAAC
AGGAGAAAAAATACTACAGGTGATCCTCAACATAACAGTTTGTCATTACA
AATTCTGAATTCTATAAAACGTATAAAACCGCTCATGGGATTATGAATGA
GAAACCAATGTCAGAAGTACCATGTACCATGATACCATCCATGTGTAATA
CATTGTTTTCCAGGTTTTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGT
GTGAGTGTGTGTCCCCCCCCCCCCCTCTTTTTGCCCCCTTTCCCTCCTTT
TTTCACCTCCCCATTTTCCCCTATAATTCATATCCTTTCTCCTCCCTTCT
CTTCACATCTCTTCCTTTTTTCTTCTTTTTTTTTTCTATTCCCTTTATCC
TTCCCTTCTATCATTCTTTTTCTAACTCCTCCCTTTTTCCCTCCTATTCT
CCCTTTTTTCCTTACTATCACCTAACTCTCATCACACTTTTTTTCTCTTT
CCCCCTTTACCCCACCATCCCCACCCTCCTATGTTCTCCTTTACTCCTTC
TCTCCAATTCTCCTCTCCTTCTTCCTCTTTTCTCTTATTTCACCACACCT
TTCCACCCTTTTTATCCTTCTCATTCCCCTTCCC
TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATGTATGGTTCCATTTATAAAAATGATCAGAAA
AATCAAGTTTACAAGACTAACTTGGTTAGTAGGTATCTAGACTAGACTAC
GGTAGAAGATGTTTGGCTTATGGAAAGTGGCCCCTAGTGTGTGTACATTA
TAGGGGTGGTGAAGCTGCAACCGCTGAAGTTTACTGTTGAGTCAGTTGAG
CAGCGATGGGATACCTTTAAACATGGTGTTTATACCATTTAAATGGGTCA
TTTATATATAAATATTTTTGATACGATCTATGACAGCATTGCTAAAATTT
GACAACAGTATTTCCCCACCGTCACTTAGATGTAATTGTTACGGTTTAAA
GACCACCCCTCATAAAACCCCTCCCCATTTTGACAGCTCTATCTTCAGTG
CTGAAGAGTTGCTTCCTATGACAGAGGAGGCGCCGAGCTCTGAATATGCA
GGGAACGATTGTCATCCTCTCATGACGGTGTTTGTTACCCTATGCCCATT
TCACGCCTCCTTTGATCCTCGATTCCACACTCTCCTTCATATATCCCTCC
TTTACTGACTCTTATCTGTACCACCATACTCTCCTTCCCTTTTTTCTCCT
GTTCTGTATAATCGCCTCCTCATTCCCCTCCTCGAAATTCCAACCTCCCC
CACCTTCTCCATTCCCGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_e20.b1 MSMg01no102_e20.b1 CHROMAT_FILE:
MSMg01no102_e20.b1 PHD_FILE: MSMg01no102_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:51 2005
         (283 letters)



>mm_chr6_92742434_92743115
          Length = 682

 Score =  393 bits (203), Expect = e-114
 Identities = 215/219 (98%), Gaps = 1/219 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttagaccttacctcaaaagagcttcatgcacaagaccacggactcactccccaacacc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 418 agttagaccttacctcaaaagagcttcatgcacaagaccacggactcaatccccaacacc 359

                                                                       
Query: 61  tacccaaacaaacaaagaaacaggagaaaaaatactacaggtgatcctcaacataacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tacccaaacaaacaaagaaacaggagaaaaaatactacaggtgatcctcaacataacagt 299

                                                                       
Query: 121 ttgtcattacaaattctgaattctataaaacgtataaaaccgctcatgggattatgaatg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 298 ttgtcattacaaattctgaattctataaaacgtagaaaaccgctcatgggattatgaatg 239

                                                  
Query: 181 agaaaccaatgtcagaagtaccatgtaccatgataccat 219
           |||||||||| ||||||||||||||||||||| ||||||
Sbjct: 238 agaaaccaatatcagaagtaccatgtaccatg-taccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 682
Length adjustment: 9
Effective length of query: 274
Effective length of database: 673
Effective search space:   184402
Effective search space used:   184402
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)