BAC Information

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BAC

Clone NameMSMg01-102H18
Chromosome6 (Build37)
Map Location 35,452,910 - 35,453,340
singlet/doubletsinglet
Overlap genenone
Upstream geneBpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102H18.T7 (MSMg01no102_h18.b1)MSMg01-102H18.TJ (MSMg01no102_h18.g1)
ACCAG317614AG317615
length701735
length of high quality
(start - end)
432 (48 - 479)259 (59 - 317)
definitionCHROMAT_FILE: MSMg01no102_h18.b1 PHD_FILE: MSMg01no102_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:05 2005CHROMAT_FILE: MSMg01no102_h18.g1 PHD_FILE: MSMg01no102_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTACCTATTCGGAGAGGATCCGCGGAATTCTGACAGTCCCCCTAGACAG
GATTTGCTACTGCAAATGCCAACTGATGGAGCCCTGTCCCATTTCCAGAG
ATGCTTGGTGATTCAAAGAACCAATAAACAGGACAAGTCTTCAAATATGA
CAACTGTACAGGTTGCTTTTCAAATAGTTTTTACCTTAGCAGGGCAGAGG
ACTTTAGCTTATCAGTTAAGTCAGTCTTCCGTGATTCTAGCACCCACAGT
GACTCATGTATCAAAGTTGGGCAACAGGCCCAGAAGATGGCTGCTCTTCC
AACTATTTTCCAAAACCTTTTTTTTTCCTACCCCTCTCCCTGGCACACTC
CCACTGGGTTATTTCTTTAGCCATAACACTGAAGAGATAACTATTTAGGG
ATAGAGAGGATAGAGGGAAAGTAGTATAGTATAGGAAAGTCTAACCTTGA
AGCGAAAAATCAAAGAAAAGATGACAAGATGTCTCAGTGGGTGGCAATAT
AACACGAAGTCTAGAGGCCTGAGTTCAATTCCTTGGACCTAACTGATGGA
AGGAGAGAACCAATTCCCACAAGTTATCCTTGGATCTCAGCACATCCTCA
TATGCACACATACTTATGTAGAAACACACAAACACCCACAGACACTAAAG
CCAATGTTTAAATTTTGAAAAAGGAATATGTACTGTCAAAACAGAATTTT
T
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCTGAAATTCATTTTTGCGGNGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGCGGCTTCAGGCTTGACTGCTCTGTATTGGAC
AACCAGTTATGAGTCCTGTCCTCAGGAAGTGCTAACTCTCCCCCTCTCCG
CAGTCATCAGTTGCCTGTAGTTTCTTGTCCAGGGCTGTGACCCCATGAGA
TGTCCTCCTCCTGCATGTCTATTGGTACTGTATTACACGTACCAGTGACT
GTACATGAGGTAATGCTCTTGTTTTCATTTTGATGAGACCCTGTTTCATA
GCAGCCTTTTTGTTATCCCCCCCCCCCCACCCCCTTTCTACTCTTTTTCT
CTGAAATGTTCCCTTAACTAAAGAAGCAGGAGCTGTAACATATGGTTGGA
CTTTCCACAATCTGTCGACCTTGGCATTCTGTCCAGCTGTGATGGTCTTT
ATTTGTTGTATAAAGGATCTTTATCTGTGGTCCTAACAATAATACAGCAC
TTATGTCGTTCTATCTTAGGTGCAATAGTAGATTCTGTTCTACTATTTAT
GAATTTTGCTACCTTCTGCCACACTTTCCTAGTTTCTAATTATCAGCCTA
TTTTCCCGCTTGTTGTTCAATCCTTCCTTTCCCTTCCTCCCTGCACTCTA
TCTCACCCTTTTGAAATGCTTTTATTGACCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_h18.b1 MSMg01no102_h18.b1 CHROMAT_FILE:
MSMg01no102_h18.b1 PHD_FILE: MSMg01no102_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:05 2005
         (432 letters)



>mm_chr6_35452710_35453540
          Length = 831

 Score =  812 bits (420), Expect = 0.0
 Identities = 429/432 (99%), Gaps = 1/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatttgctactgcaaatgccaactgatggagccctgtcccatttccagagatgcttg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 631 caggatttgctactgcaaatgccaactaatggagccctgtcccatttccagagatgcttg 572

                                                                       
Query: 61  gtgattcaaagaaccaataaacaggacaagtcttcaaatatgacaactgtacaggttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtgattcaaagaaccaataaacaggacaagtcttcaaatatgacaactgtacaggttgct 512

                                                                       
Query: 121 tttcaaatagtttttaccttagcagggcagaggactttagcttatcagttaagtcagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tttcaaatagtttttaccttagcagggcagaggactttagcttatcagttaagtcagtct 452

                                                                       
Query: 181 tccgtgattctagcacccacagtgactcatgtatcaaagttgggcaacaggcccagaaga 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 451 tccgtgattctagcacccacagtgactcatgtatcaaaattgggcaacaggcccagaaga 392

                                                                       
Query: 241 tggctgctcttccaactattttccaaaacctttttttttcctacccctctccctggcaca 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 tggctgctcttccaactattttccaaaacc-ttttttttcctacccctctccctggcaca 333

                                                                       
Query: 301 ctcccactgggttatttctttagccataacactgaagagataactatttagggatagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ctcccactgggttatttctttagccataacactgaagagataactatttagggatagaga 273

                                                                       
Query: 361 ggatagagggaaagtagtatagtataggaaagtctaaccttgaagcgaaaaatcaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggatagagggaaagtagtatagtataggaaagtctaaccttgaagcgaaaaatcaaagaa 213

                       
Query: 421 aagatgacaaga 432
           ||||||||||||
Sbjct: 212 aagatgacaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 831
Length adjustment: 9
Effective length of query: 423
Effective length of database: 822
Effective search space:   347706
Effective search space used:   347706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)