BAC Information

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BAC

Clone NameMSMg01-103B02
Chromosome6 (Build37)
Map Location 42,230,415 - 42,230,650
singlet/doubletsinglet
Overlap geneCasp2
Upstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139
Downstream geneClcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103B02.T7 (MSMg01no103_b02.b1)MSMg01-103B02.TJ (MSMg01no103_b02.g1)
ACCAG318040AG318041
length768714
length of high quality
(start - end)
236 (84 - 319)367 (75 - 441)
definitionCHROMAT_FILE: MSMg01no103_b02.b1 PHD_FILE: MSMg01no103_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:51 2005CHROMAT_FILE: MSMg01no103_b02.g1 PHD_FILE: MSMg01no103_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCCAGTCTTCTAAATTTGTGATCGCTAAACGACTCACATAGGGTCTA
AATACGCGGAATTCCACCGATGCATTGTCATGTCTGAGTACTGTAGTACT
CTGTGCCAGCAACTCTACCTGTTCCCAGGCTACCCACCCACGTGATGCCG
CCTGCTATTCCTGCTGTTGGAGGCCACTGGACCACTGGGGGCACAATGGA
GACTTCTCTTCACAATGGTTTTTGTTCTGTCTACCCTCTCAGGGATATGA
GATTCTCCCAGGCTTGTTTCCTGTCAGCCATCTCTGTCTTTGGGTATGAA
ACATAAGGATGGCTCCTCCGGTGTCGTGTTCTCTACCTATAGAGCCAGCT
CTGACTGCATGTGTTACCAGAAGCATTTTGTCTACCGCCTACAAAATGAC
ATTGTGAAAACAGTATTATTGTGGGAACAGGCCTTTGAACTTACCGTTTG
GAAATTTTTGGCCCCGTTCCACAGGCTCCTTAAGAATACTTGGAATCAAA
TATTTTCTTTTTTTCCTTAAATCCCATAAAGTAAGCCCCCAAGAATCACC
CCTATTTTCTTTCCACCTAACGAATCATATTTCCTTACCCAATATGGACA
ACTCGGCAAACATGTCCCCACTTTTATCGCAAGGGGCATCCCACCCCGCT
CTGGAAAGGTCGACCAACCTTTTAATAATCCGCTTACTTCTTCTTCCTTA
TTTTTTCCCCCATTCTTTCGGCCCCATTTCCACCTACCTGGCTCCCCCCT
CCCCTCCCTTTTCTTGTC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCGNAATCTCACCTGAGGAATACCGAATGGCAGAG
AAGGACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAATACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGACCA
AAAATTCAGGTGACAGCAGAAGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTAGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGCATACAGAAAATGT
GCTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCTAAATGGATGGACCTGGACGGCATCATCCTGAGTGA
GGCAACCCATTCCTCAAGAAACTCACACCATCTGTACTCACTGATCAGCG
GATATTACCCCCCAATCTAGGATACCCAAGATATAAGATATTCTTTGTTA
ACCACTTGACACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_b02.b1 MSMg01no103_b02.b1 CHROMAT_FILE:
MSMg01no103_b02.b1 PHD_FILE: MSMg01no103_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:51 2005
         (236 letters)



>mm_chr6_42230215_42230850
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagtactgtagtactctgtgccagcaactctacctgttcccaggctacccacccacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagtactgtagtactctgtgccagcaactctacctgttcccaggctacccacccacgt 260

                                                                       
Query: 61  gatgccgcctgctattcctgctgttggaggccactggaccactgggggcacaatggagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgccgcctgctattcctgctgttggaggccactggaccactgggggcacaatggagac 320

                                                                       
Query: 121 ttctcttcacaatggtttttgttctgtctaccctctcagggatatgagattctcccaggc 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctcttcagaatggtttttgttctgtctaccctctcagggatatgagattctcccaggc 380

                                                                   
Query: 181 ttgtttcctgtcagccatctctgtctttgggtatgaaacataaggatggctcctcc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtttcctgtcagccatctctgtctttgggtatgaaacataaggatggctcctcc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)