Query= MSMg01no103_i03.b1 MSMg01no103_i03.b1 CHROMAT_FILE:
MSMg01no103_i03.b1 PHD_FILE: MSMg01no103_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:27 2005
(616 letters)
>mm_chr6_67242586_67243600
Length = 1015
Score = 1120 bits (579), Expect = 0.0
Identities = 605/615 (98%), Gaps = 6/615 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactctgtataccacggctgtagaaatctgcctgcctctctctgcctcccaagt 63
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 910 ggaattcactctgtagacca-ggctgtagaaatctgcctgcctctctctgcctcccaagt 852
Query: 64 gctgggattaaaaggcgtgcgccaccatacccggctttcaagtgatctttcctaattgcc 123
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 851 gctgggattaaaaggcgtgcgccaccatacctggctttcaagtgatctttcctaattgcc 792
Query: 124 aaatctgacatgtttccttacctgaaaccatggaagtccatcaaagtccaagccccttag 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 791 aaatctgacatgtttccttacctgaaaccatggaagtc---caaagtccaagccccttag 735
Query: 184 catatccccaaagtacgatgaagatgttatgatgcctttaatcacatttttaatcctagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 catatccccaaagtacgatgaagatgttatgatgcctttaatcacatttttaatcctagt 675
Query: 244 acacaggaggtagagatccaagctagccagggctacatagcggtctttaataaaagtgct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acacaggaggtagagatccaagctagccagggctacatagcggtctttaataaaagtgct 615
Query: 304 tcgtgagtagcctttcccatttctaaatccttttttcttttctagtactaacagggctag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcgtgagtagcctttcccatttctaaatccttttttcttttctagtactaacagggctag 555
Query: 364 gggtgtgatccagtgagtgtaaagcatatgccttatcctacacaaactgagtttgattct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gggtgtgatccagtgagtgtaaagcatatgccttatcctacacaaactgagtttgattct 495
Query: 424 caacaaaagggtaatgggcaacaaactagaaggcttagttcaccaatttccttcgacctc 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 494 caacaaaagggtaatgggcaacaaactagaaggcttagttcaccaatttccctcgacctc 435
Query: 484 caatactccatccttctctccagactgccctaagctttttctttctgcctttcctact-g 542
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 434 caatactccatccttctctccagactgccctaagttttttctttctgcctttcctactag 375
Query: 543 g-gggggggggggaagcaagtggcctgaggctgagcaatgaatctctccttggctggaga 601
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagggggggggggaagcaagtggcctgaggctgagcaatgaatctctccttggctggaga 315
Query: 602 atggcagtgataggg 616
|||||||||||||||
Sbjct: 314 atggcagtgataggg 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_i03.g1 MSMg01no103_i03.g1 CHROMAT_FILE:
MSMg01no103_i03.g1 PHD_FILE: MSMg01no103_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:27 2005
(239 letters)
>mm_chr6_67175730_67176371
Length = 642
Score = 406 bits (210), Expect = e-118
Identities = 233/242 (96%), Gaps = 3/242 (1%)
Strand = Plus / Plus
Query: 1 cagaggtgtttagcaggtagaaatgcttgggcttgatgagagtctggctgtgggaggaag 60
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagagatgtttagcaggtagaaatgcttgggcttgatgagagactggctgtgggaggaag 260
Query: 61 atgtcaaaaaccacctgctgttaaaacagctgggtggaggatgcttcgctcactaagata 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 atgtcaaaaaccacctgctgttaaaacagctgggtggaggatgcctcgctcactaagata 320
Query: 121 gagatctctgggtggaaggcatcaaacacagggtagaggccagtctgtggatatatgggt 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gagatctctgggtggaaggcatcaaacactgggtagaggccagtctgtggatatatgggt 380
Query: 181 gagaaca---gcctgggaactggtgagcttgtggtacccatgggacatccaaatgacacc 237
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gagaacatcagcctgggagctggtgagcttgtggtacccgtgggacatccaaatgacacc 440
Query: 238 ag 239
||
Sbjct: 441 ag 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 642
Length adjustment: 9
Effective length of query: 230
Effective length of database: 633
Effective search space: 145590
Effective search space used: 145590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
