BAC Information

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BAC

Clone NameMSMg01-103I13
Chromosome6 (Build37)
Map Location 45,930,592 - 45,930,835
singlet/doubletsinglet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103I13.T7 (MSMg01no103_i13.b1)MSMg01-103I13.TJ (MSMg01no103_i13.g1)
ACCAG318376AG318377
length727703
length of high quality
(start - end)
619 (42 - 660)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no103_i13.b1 PHD_FILE: MSMg01no103_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:29 2005CHROMAT_FILE: MSMg01no103_i13.g1 PHD_FILE: MSMg01no103_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCTGATTACACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACC
TCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGC
TGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTG
CAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAAC
TGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATAT
CCAGAAGATGCCCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCAT
AGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTACATGCCCCT
CAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTAC
TACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGAT
GGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACT
CACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCTAGGAT
ACTCAAGATATAAGATATAATTTGCTAAACACATGGAACTCAAGAAGAAT
GAAGACTGAAGTGTGGACACTATGCCC
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAAACAGAATTCTTTTCACTGGACAGTAACATTATCAG
AAAGAAAGCAACCCTAGTTTATTTGTATTTTTGATTTACAAAGATATAAT
AAAAAATAGCTTCCATGTGGATTTTCATCAAATGAATTTTATGCTAATTT
TCAGAAAGTTCATATTATTTATGCATTATTAGGCACGTTTGATTCATAAC
ATACTTAGAAAAAGATTGTTCTGATTTTCAGGTGTGCTATGAGTTGTTAG
TGGGTGGGAGAGGATATATTATATGGAATCTGTAACAATGTACATGCATA
TGAATGGCCAATTCTGCAAGCACAGGCTACTTTGAATTTCATTTTCAGTT
TTGATATTGAATAATGCAGCTTTGGCACTGTACTTTGAAATTTACTAATA
TCTTTCTATGTCCAGATTTGGTTCACCGATCTTACTACTTAATGAACTAC
TCTTAACCCATTGTTTATTATAGCTTTTCTTATAGCACCTCCATATCTTT
ATATATCATTCCGGAATTTATCCTTCCTTCTTATGACCGCTTTTCCAATT
CACCCTCCCCCTACCTTTCAACATCTGCTTTCGTACCGTCTCATCACCTT
TTCATCCCCACCGATCCACTTTTATCTTCTCCTTCCATATTCCCCACCTG
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_i13.g1 MSMg01no103_i13.g1 CHROMAT_FILE:
MSMg01no103_i13.g1 PHD_FILE: MSMg01no103_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:29 2005
         (244 letters)



>mm_chr6_45930392_45931035
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttttcactggacagtaacattatcagaaagaaagcaaccctagtttatttgtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcttttcactggacagtaacattatcagaaagaaagcaaccctagtttatttgtattt 260

                                                                       
Query: 61  ttgatttacaaagatataataaaaaatagcttccatgtggattttcatcaaatgaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatttacaaagatataataaaaaatagcttccatgtggattttcatcaaatgaatttt 320

                                                                       
Query: 121 atgctaattttcagaaagttcatattatttatgcattattaggcacgtttgattcataac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctaattttcagaaagttcatattatttatgcattattaggcacgtttgattcataac 380

                                                                       
Query: 181 atacttagaaaaagattgttctgattttcaggtgtgctatgagttgttagtgggtgggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacttagaaaaagattgttctgattttcaggtgtgctatgagttgttagtgggtgggag 440

               
Query: 241 agga 244
           ||||
Sbjct: 441 agga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)